CANTATAdb - search

Detailed information on CNT30670689

BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 1e-14

BLAST vs NONCODE:
NONORUT000586, E-value = 6e-131

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3094274	Setaria viridis	Solanum tuberosum	27.54	100	98.64	295	forward
CNT30554477	Setaria viridis	Oryza glaberrima	67.51	100	98.76	723	forward
CNT30605073	Setaria viridis	Gossypium raimondii	68.07	47.96	98.35	729	forward
CNT30596676	Setaria viridis	Oryza meridionalis	10.64	49.14	92.11	114	forward
CNT30571801	Setaria viridis	Vitis vinifera	88.33	72.49	99.05	946	forward
CNT3038287	Setaria viridis	Cucumis melo	86.46	61.77	98.6	926	forward
CNT3099471	Setaria viridis	Oryza rufipogon	23.53	100	100	252	forward

Expression of CNT30670689

Peptides detected in this lncRNA

>peptide 1 (29 aa)
FSTRSLHTSRCLHLSPIEVLFKNLVRELV*

>peptide 2 (59 aa)
LVRDRFTPRGAYTSRLSKFCSKTSYENLYREGFPAAQQFFHTNLAARRCYWHNNRYTIG*

>peptide 3 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNQRLSLPSHTSVTL*

Sequence

>CNT30670689
GTTTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAAACCTCGTACGAGAACTTGTATAGAGAAGGATT
TCCCGCGGCGCAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAACCCAGTCCTCTCG
TACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCA
TCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGT
CATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGAC
CAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCAACGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCA
TCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAG
TCAAGGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGT
TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC
TTATCACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCC
ACTTCAGAGTCTTCTTAGAGAGTCGATCCGTGTCCGCCCCAGCAAGAAAACGGCTGCGCGTTATTGTACTA