Detailed information on CNT30670676


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K7E6|ERF1_ORYSJ, E-value = 6e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696022Setaria viridisOryza sativa20.367.3688.6179forward
CNT30641314Setaria viridisNymphaea colorata20.17.8985.978forward
CNT30189427Setaria viridisSecale cereale26.818.4181.73104forward
CNT30554930Setaria viridisOryza glaberrima20.369.0588.6179forward
CNT30441454Setaria viridisAegilops tauschii59.7931.8283.62232forward
CNT30686876Setaria viridisTriticum urartu59.7955.1185.34232forward
CNT3035665Setaria viridisCucumis melo22.1617.6283.7286forward

Expression of CNT30670676

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLSQGVVSRWVEVCICVGKAVHCWFDSRLLFHT*

Sequence

>CNT30670676
GTAGCAACGATAGAAAGGTGGACAAAATGGTTTTCAGTCTCATAAATGGCTGTCATACAAACACGGTTAAATAGGGAACAGGTGCCATAACCAAAGAGTT
TCAGAATGCAACTTTTGCATCTGAGCTAGACACAAGCATATGCTATCCCAAGGTGTAGTCAGCAGGTGGGTAGAAGTATGCATTTGTGTTGGCAAGGCTG
TTCACTGCTGGTTTGACAGCAGGCTTCTGTTCCACACTTGACTTGGGTGCTTTAGCAGCAGGTGGGCCAGATCGGCGCTTCTGAGCAACTGTCGGTGCAT
CAGGAAAGTTAACCTTGGCCTTCTTGCCACGGATCCTGCGTGCTTCAGCATCATAGGCTCTTGCAGCTTCCTCAGGACTATTGAAAGT