« Back to Setaria viridis search


Detailed information on CNT30670566


BLAST search results

BLAST vs Swiss-Prot:
sp|P12857|ADT2_MAIZE, E-value = 3e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30355032Setaria viridisLactuca sativa25.5515.6582.03128forward
CNT30369687Setaria viridisOryza glumipatula24.1537.8190.91121forward

Expression of CNT30670566

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LDSLTRRHHHPSADSVNGVRCKTSAVDVEPTVKPSNTIGL*

Sequence

>CNT30670566
ACTTGACAGCCTCACCAGACGTCATCATCATCCTTCTGCGGACAGTGTCAATGGGGTAAGATGCAAGACCAGCGCCGTTGATGTTGAACCCACGGTAAAG
CCCAGCAATACCATCGGACTTTAGAGTCTTGCGGTAGACATCCACAAGACCATTGAATTGCCTATCACCTCCTCCCTTGGCTGCCTTTGCGTCATTGGCC
AGCCTTGTCCTCGCATAGTCCAGGGAGTACACAAAAAACAGGGAGGACGCACCAGCAGCACCACCAGAGGATGACACCGCTGGGACATTGATGCCACCAC
TGACAGACATTGAAGGGCCCCAAAGGCTCTGGGTCATGTAGTTCCTTGTGGGAAATCTCCTCTCATAAGACGAGACAGAAGGGCAGATGTTACGGGCCCG
TACACCTTCTGAGAAGCTGGAGCTCAGGTGGAACTGGCCACCGAGCTTATGAAGGACAGTTGGTTGGTTGACCTGGTCCGCCATCACCACCTCAAAACAA
T