« Back to Triticum dicoccoides search


Detailed information on CNT30670388


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 3e-13

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Triticum dicoccoidesOryza sativa17.1510098.75481forward
CNT30671914Triticum dicoccoidesSetaria viridis34.8458.7597.95977forward
CNT30524649Triticum dicoccoidesSetaria italica61.0651.9498.421712forward
CNT30378673Triticum dicoccoidesArabidopsis thaliana25.6857.7496.25720reverse complement
CNT30619000Triticum dicoccoidesSesamum indicum35.3132.4194.14990forward
CNT30730481Triticum dicoccoidesCorchorus capsularis42.2696.3493.251185reverse complement
CNT30632407Triticum dicoccoidesVigna unguiculata34.4935.895.76967reverse complement
CNT30490123Triticum dicoccoidesOlea europaea18.7630.2196.58526forward
CNT30505430Triticum dicoccoidesNicotiana attenuata37.9545.3395.021064forward
CNT30712870Triticum dicoccoidesGlycine max15.4426.0594.92433forward
CNT30157603Triticum dicoccoidesPistacia vera26.5778.0990.2745forward
CNT30185187Triticum dicoccoidesSecale cereale10079.2899.292804forward
CNT30292784Triticum dicoccoidesTriticum aestivum99.7993.3398.892798forward
CNT30223648Triticum dicoccoidesHordeum vulgare75.2188.895.692109forward
CNT30394721Triticum dicoccoidesTriticum turgidum10076.5599.252804forward
CNT30543268Triticum dicoccoidesBrassica napus42.3751.7694.951188forward
CNT30555751Triticum dicoccoidesOryza glaberrima15.1959.7597.65426reverse complement
CNT30439575Triticum dicoccoidesAegilops tauschii50.2910099.291410reverse complement
CNT30242786Triticum dicoccoidesAvena sativa30.8810098.04866forward
CNT30140120Triticum dicoccoidesLolium perenne10084.4398.642804forward
CNT3017956Triticum dicoccoidesZea mays66.4852.85971864forward
CNT30605073Triticum dicoccoidesGossypium raimondii27.550.7296.24771reverse complement
CNT30655407Triticum dicoccoidesRosa chinensis45.1937.994.161267forward
CNT30207637Triticum dicoccoidesHelianthus annuus38.0554.5594.11067forward
CNT30688989Triticum dicoccoidesTriticum urartu69.4498.9899.591947forward
CNT30721631Triticum dicoccoidesTriticum spelta10080.7499.182804forward
CNT30346087Triticum dicoccoidesEragrostis tef28.3576.8999.5795forward
CNT30595568Triticum dicoccoidesOryza meridionalis13.6998.9798.7384reverse complement
CNT30360996Triticum dicoccoidesLactuca sativa38.0273.0694.841066forward
CNT30434643Triticum dicoccoidesPapaver somniferum26.82101.0892.95752forward
CNT30571858Triticum dicoccoidesVitis vinifera35.3128.5696.57990reverse complement
CNT3057903Triticum dicoccoidesAmborella trichopoda40.9147.8791.631147reverse complement
CNT30108930Triticum dicoccoidesOryza longistaminata55.7866.8498.591564forward
CNT30103741Triticum dicoccoidesOryza rufipogon15.0980.4295.98423reverse complement
CNT30499372Triticum dicoccoidesDigitaria exilis66.354.6998.171859forward
CNT30603680Triticum dicoccoidesOryza punctata66.3747.1598.551861forward
CNT30557400Triticum dicoccoidesPanicum hallii23.3247.6797.86654forward

Expression of CNT30670388

Peptides detected in this lncRNA

>peptide 1 (50 aa)
GCPGIEKEGRFQRRKAMGRDFSMIHGSPIGKPYPSSVASLRSLDFSNLAN*

>peptide 2 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 3 (33 aa)
MMSMALGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 4 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESSFFKCQ*

>peptide 5 (84 aa)
MSAKAVALLYTRIRFLAGADTDFSLKAKKKKWANTWPSGRTCRLRLRAPADTFRSTFTCEPKSSCRTPSFLISVLAFFIFRRGL*

Sequence

>CNT30670388
GGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGATTTTTCTATGATCCATGGATCTCCGATCGGGAAACCGTATC
CAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAG
TAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCA
GCAAGCATAGTTAGAAAAGTTGCCGTAGCGTGCCCTACGGAGTTGTACAAAGTCAGCAACCGTTTTGGGGTGCAAGCATAGGCAACACAGGACTGATGAC
GGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAAGATCCGGCCAAAGAAGGTGATAGCCCTGTTCATTCGTTCCCATGGTTCGATCCTTCC
CAGTAAAACGCGGCGTGTTCGAATGATGATCACTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCGTAAGTATTCCTCAATGACCGATAGCGTACAAGT
ACCGTGAGGGAAAGGTGAAAAGAACCCCAATCGGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCAC
TCACTCTAACGGCGTACCTTTCGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTA
CGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGTGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAA
TACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGC
CCTAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCCAGGGAAACTCCAAATACAGGCCGTCATCCTTAGTACAGACAGACT
GATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATG
ACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTG
ATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGAT
ATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAG
TGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGA
GCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCGCTCTCCTTTCCTTAATATTCACCGTCGAGTCATCAAAGCCGTCAACTAATTCAGAG
GGGCTCGGCTGGCCCGGTCGCCCTACGCTACTGGCGCTTCCAAAGGCGAAGCTCTCGTCTTTGGCGACCAGCAAACGGAGGGCTAAAACCTGTAGTTTTG
AAGCAAGGGATGAGCGCGAAAGCCGTTGCACTTCTGTACACGCGCATACGTTTTCTTGCTGGGGCGGACACGGATTTCTCTCTAAAGGCGAAGAAAAAGA
AGTGGGCGAACACTTGGCCCAGCGGGCGAACATGCCGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTC
TTGCCGAACTCCTTCCTTTCTCATTTCAGTCCTCGCCTTTTTCATCTTCCGTAGGGGCCTTTAGTCTTTTGATTAGAGTGGAGGTCGCGAGAGAGCAGAG
CGTACCGCCCTGCCATAGTCGCGAGGATCTTAATAGTCGGTTGCGACTGTTGTCATAGTCAACGACGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGG
AGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAAGGAACTCG
GCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACA
GGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGG
TAAACGGCGGCAGTAACTCTAACTGTCATAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCC
GACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTGACTATAGCTTCGTAGTGACAA
CCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGAT
CATT