Detailed information on CNT3066989


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Leersia perrieriOryza sativa12.3534.4295.28127forward
CNT30225098Leersia perrieriHordeum vulgare7.7828.7886.2580forward
CNT30460356Leersia perrieriSaccharum spontaneum12.6527.1486.92130forward
CNT30584129Leersia perrieriEchinochloa crusgalli8.8521.2689.0191forward
CNT30603733Leersia perrieriOryza punctata14.0127.1794.44144forward

Expression of CNT3066989

Peptides detected in this lncRNA

>peptide 1 (71 aa)
LVAYSSVLLLASLLPHSHLSFLDFYTVHTLQGSRSSQEAAEEGLGLGVRFGDGSPSGSGDEHRRLPGQDHG*

>peptide 2 (79 aa)
MLLLLLRLLLQHPGFPLLFFLMLLLAALLLKLQPMEVLVYSGVFYIYRTVILGCESYEFLIILFRPWIGVSVIFESLYG*

>peptide 3 (48 aa)
MNVALAATIAAPASWISSVVLLDAAPRGLAAETPADGGIGVFGCFLYI*

>peptide 4 (58 aa)
CCLLQCTSFSQPSSSLTSLFLGLLHGTYPPGLQVFTRSSRGGLGPWCTFWRWIPQRLR*

>peptide 5 (43 aa)
MDDFGSKFLHHLGDYVSDTISIDLASSGFCGTSSLVFYSTQIS*

>peptide 6 (41 aa)
MDPPAAQVMNTDDFQDKTMDECCSCCYDCCSSILDFLCCSS*

>peptide 7 (37 aa)
MTSQMAGWHPDLKRAWLFCQLLLVSDDIKLSTGVEVS*

>peptide 8 (31 aa)
MIFETLRLRMLNVPSWFFFFSCVLTFSLLLR*

Sequence

>CNT3066989
CTTGTTGCTTACTCCAGTGTACTTCTTTTAGCCAGCCTTCTTCCTCACTCACATCTCTCTTTCTTGGACTTCTACACGGTACATACCCTCCAGGGCTCCA
GGTCTTCACAAGAAGCAGCAGAGGAGGGCTTGGGCCTTGGTGTACGTTTTGGCGATGGATCCCCCAGCGGCTCAGGTGATGAACACCGACGACTTCCAGG
ACAAGACCATGGATGAATGTTGCTCTTGCTGCTACGATTGCTGCTCCAGCATCCTGGATTTCCTCTGTTGTTCTTCTTGATGCTGCTCCTCGCGGCCTTG
CTGCTGAAACTCCAGCCGATGGAGGTATTGGTGTATTCGGGTGTTTTTTATATATATAGAACTGTGATATTGGGCTGTGAAAGTTATGAGTTCTTAATTA
TATTATTTCGCCCTTGGATTGGTGTATCTGTGATATTTGAGTCACTTTATGGATGATTTTGGGAGCAAATTTCTGCATCATCTAGGTGACTACGTTTCAG
ATACTATCAGTATCGATTTGGCTTCTTCTGGCTTTTGCGGTACTAGCTCTTTAGTGTTCTACAGTACGCAAATCTCTTAAATTTGCGTGTTCATATTTGA
CGCTTCGTGCCATCAGCGAGTGGAGCTTGAGTCATGAAATACACGCACTAGCACTACGATGATATTTGAGACTTTGAGGTTGAGAATGTTGAATGTACCA
TCTTGGTTCTTTTTTTTCAGTTGCGTTTTGACGTTTTCTCTTTTGCTGAGATGACATCGCAAATGGCTGGATGGCATCCAGACCTGAAGAGGGCTTGGCT
TTTCTGTCAGTTGTTACTTGTTAGCGATGATATCAAGTTGTCAACTGGAGTAGAAGTTTCGTAATGTAAGGATAACTATTAAGGCCAGCTCGATCAGTGC
CCTGTTGCGCGTTCTAATGAATAGAAGTTGCTCCTTCATGGAGGCATCAAACTATCATCAATGAGTACAGATCAAAAGATCATACAATCACCTGATTGTT
CGTTTGGTTTTTGAAATTTCGATTTTTT