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Detailed information on CNT30669606


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521727Triticum dicoccoidesSetaria italica41.8335.8590.35228forward
CNT308481Triticum dicoccoidesZea mays44.7742.0786.48244forward
CNT30344603Triticum dicoccoidesEragrostis tef23.4925.593.75128forward
CNT30102355Triticum dicoccoidesOryza rufipogon24.422.4793.23133forward
CNT30580609Triticum dicoccoidesEchinochloa crusgalli41.8343.3591.23228forward

Expression of CNT30669606

Peptides detected in this lncRNA

>peptide 1 (61 aa)
SCKSLYRSYGCIHNSGCYLSFTHYKGCRPESRRCCTVPARTDVRAQSQRGKLINQSIDAET*

>peptide 2 (89 aa)
IMQEFIQIIRVHSQQRLLLKLYTLQRLPAGEPTLLYSSCTHGRTRAEPAWQVDQPVDRRRNMNENHVLRLLDLPSARSAPLKGRRYFWG*

>peptide 3 (75 aa)
MKTMCSGSSISPQPGRLRSRAVDISGDDDVADVVVPRVREVGGAGLAGEPLGGHGDAAGGGGVGAERQPGAAGPG*

>peptide 4 (43 aa)
MKAQAGSVRPRRCSSSGRSTTPSPLLLSRCWLLLAAVRQQQEEE

>peptide 5 (36 aa)
MTMSPMLLCHGSARWAGRGWPGNHSADMVTRPEVVA*

Sequence

>CNT30669606
CATCATGCAAGAGTTTATACAGATCATACGGGTGCATTCACAACAGCGGCTGCTACTTAAGCTTTACACATTACAAAGGTTGCCGGCCGGAGAGCCGACG
TTGTTGTACAGTTCCTGCACGCACGGACGTACGCGCGCAGAGCCAGCGTGGCAAGTTGATCAACCAGTCGATCGACGCAGAAACATGAATGAAAACCATG
TGCTCCGGCTCCTCGATCTCCCCTCAGCCCGGTCGGCTCCGCTCAAGGGCCGTAGATATTTCTGGGGATGACGATGTCGCCGATGTTGTTGTGCCACGGG
TCCGCGAGGTGGGCGGGGCGGGGCTGGCCGGGGAACCACTCGGCGGACATGGTGACGCGGCCGGAGGTGGTGGCGTAGGCGCAGAACGGCAGCCCGGAGC
GGCCGGACCGGGATGAAGGCGCAAGCAGGCTCGGTACGCCCACGGCGCTGCAGCTCCTCAGGCCGCTCGACGACGCCATCGCCATTGTTGCTGTCTCGAT
GCTGGCTGCTCCTTGCTGCGGTGAGACAACAACAGGAAGAAGAAC