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Detailed information on CNT30669298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673696Triticum dicoccoidesSetaria viridis21.7335.2890.16193forward
CNT30244624Triticum dicoccoidesAvena sativa20.8375.8285.95185forward
CNT309612Triticum dicoccoidesZea mays22.321.0490.4198forward
CNT30364335Triticum dicoccoidesSorghum bicolor21.8522.2588.66194forward
CNT30580511Triticum dicoccoidesEchinochloa crusgalli21.6250.6690.62192forward

Expression of CNT30669298

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MKTMCSGSSISPQPGRLRSRAVDISGDDDVADVVVPRVREVRGQVLQRAVVDLGLLEPLEVLWHGGEAQGVEPEVPAGRI*

>peptide 2 (45 aa)
MKAQAGSVRPRRCSSSGRSTTPSPLLLSRCWLLLAAVRQQQEEEQA

>peptide 3 (88 aa)
MQEFIQIIRVHSQQRLLLKLYTLQRLPAGEPTLLYSSCTHGRTRAEPAWQVDQPVDRRRNMNENHVLRLLDLPSARSAPLKGRRYFWG*

Sequence

>CNT30669298
GTTTGGGGTCTCCCCTGACTTTGTTCTTTCTGTAATCACTGATGACATTTCCAGCTTCGCTGGTTAAATAAAAATGCAGCAGCATTGATCCTCAAGAAAA
AGACCATCATCATGCAAGAGTTTATACAGATCATACGGGTGCATTCACAACAGCGGCTGCTACTTAAGCTTTACACATTACAAAGGTTGCCGGCCGGAGA
GCCGACGTTGTTGTACAGTTCCTGCACGCACGGACGTACGCGCGCAGAGCCAGCGTGGCAAGTTGATCAACCAGTCGATCGACGCAGAAACATGAATGAA
AACCATGTGCTCCGGCTCCTCGATCTCCCCTCAGCCCGGTCGGCTCCGCTCAAGGGCCGTAGATATTTCTGGGGATGACGATGTCGCCGATGTTGTTGTG
CCACGGGTCCGCGAGGTGCGTGGCCAGGTTCTCCAGCGGGCCGTGGTAGATCTCGGACTCCTTGAACCGCTCGAAGTTCTCTGGCACGGTGGCGAGGCCC
AGGGGGTCGAACCCGAAGTCCCTGCGGGGAGAATATAAGTCGCCGGTCAGATTGATTGATGTCGAGTCGATTGGTCACTGCTCGATCGGCTACTAGTAGC
TAGCTAGCTTTGTTGCTTAGTCACCCTGGCGAGGAGCCGTCGAGGTGGGCGGGGCGGGGCTGGCCGGGGAACCACTCGGCGGACATGGTGACGCGGCCGG
AGGTGGTGGCGTAGGCGCAGAACGGCAGCCCGGAGCGGCCGGACCGGGATGAAGGCGCAAGCAGGCTCGGTACGCCCACGGCGCTGCAGCTCCTCAGGCC
GCTCGACGACGCCATCGCCATTGTTGCTGTCTCGATGCTGGCTGCTCCTTGCTGCGGTGAGACAACAACAGGAAGAAGAACAGGCGTG