Detailed information on CNT3066878


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000973, E-value = 9e-10

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694499Leersia perrieriOryza sativa9.6329.8189.72107forward
CNT30370717Leersia perrieriOryza glumipatula10.8925.0588.43121forward
CNT30604016Leersia perrieriOryza punctata10.1744.8490.27113forward

Expression of CNT3066878

Peptides detected in this lncRNA

>peptide 1 (51 aa)
PANETATPPPPNPRLLRRCYALPSHLRSPPPSRASPCVAIHAAARSVSSSD*

>peptide 2 (43 aa)
MRRYPRSRSIGVIFGLMPLATSLLLRQSLLFFLATTSSTSAFA*

>peptide 3 (33 aa)
MTSWLTRRSLPSTKVYLHGSRRRKKDVQGRYAC*

>peptide 4 (92 aa)
PLRMRLRRLRPQIPDSSAAAMHCHLTSVHPHPREPRHASLSTQPLDRCHLRTDAARYLPPPPSISAVLPGHHLLHIGVCLGRLWLCARTCEN*

>peptide 5 (91 aa)
MAPLIIGYNVRHISQETYDILANKEVIAINQGVFARIKKKEERRARKICMLNEVDWGPSRGLLQVVAWNPVRPPDAALNSNGRQFYVQAPF*

>peptide 6 (68 aa)
MESFQSPLSKGSGIIAKFNQSNRQSQKQGAAFHVMDLWACNFVWDPGPSGVAPQTGGGRPYDLLHPFK*

Sequence

>CNT3066878
CCCCTGCGAATGAGACTGCGACGCCTCCGCCCCCAAATCCCCGACTCCTCCGCCGCTGCTATGCACTGCCATCTCACCTCCGTTCACCCCCACCCTCGCG
AGCCTCGCCATGCGTCGCTATCCACGCAGCCGCTCGATCGGTGTCATCTTCGGACTGATGCCGCTCGCTACCTCCCTCCTCCTCCGTCAATCTCTGCTGT
TCTTCCTGGCCACCACCTCCTCCACATCGGCGTTTGCCTAGGTCGTTTGTGGCTTTGTGCTCGCACTTGTGAGAACTAGGAAGGCCTCCACAGCTGCAAG
ATGTTTTTGGTTCGCGTCGCTGCCACAGCCATGGAAGACCAGCAGAGTAGGCATGCCCCGATGGCTGGAATGGGCCAGTGAATGATTGGATTCAGAAACT
GGAGTATACCATCAGTTCTTGTCTGCATTCAGATGTTAAATTCATGCTTGAATTAGATGGCTCCTCTCATCATCGGGTACAACGTGAGGCACATTTCGCA
AGAAACGTATGACATCCTGGCTAACAAGGAGGTCATTGCCATCAACCAAGGTGTATTTGCACGGATCAAGAAGAAGGAAGAAAGACGTGCAAGGAAGATA
TGCATGCTGAATGAAGTTGATTGGGGACCAAGTCGAGGACTTCTCCAAGTAGTTGCGTGGAATCCAGTTCGGCCACCCGATGCAGCATTGAATTCAAACG
GCCGCCAATTCTACGTGCAAGCTCCGTTTTAGGCCCATGAGTACTTGATGGAAAGCTTTCAGAGTCCACTTTCAAAAGGATCCGGTATCATTGCTAAATT
CAATCAGAGTAACCGGCAATCACAAAAACAAGGTGCTGCATTCCATGTAATGGACCTATGGGCCTGCAACTTCGTCTGGGACCCAGGCCCAAGTGGGGTT
GCGCCCCAAACAGGGGGAGGACGCCCCTATGACCTCCTCCACCCTTTTAAATAGCTAGTTACCCCTTTAGGGTTAGTTGGGTTTTGTTAATTGTAAGTTT
AGCCATTACTACTTCGCTTGCAGCGCACGTGTCGGCTAGACCGTCCGTCTGCTTGTTTGGAACCCCACTTTATCGTGTATCGATCTATATTTGTGCGTCT
TGATTATCCAG