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Detailed information on CNT3066796


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Leersia perrieriSetaria italica88.694684.93345forward
CNT30530404Leersia perrieriEucalyptus grandis52.9658.0388.35206forward
CNT30316147Leersia perrieriCorylus avellana75.3239.3384.3293forward
CNT30703138Leersia perrieriQuercus lobata73.7854.7781.88287forward
CNT30500451Leersia perrieriCoffea canephora60.6722.1281.36236forward
CNT30615836Leersia perrieriSesamum indicum28.0228.4681.65109forward
CNT30277485Leersia perrieriChenopodium quinoa41.919.1179.75163forward
CNT3021362Leersia perrieriCitrullus lanatus46.2727.6581.11180forward
CNT30727603Leersia perrieriCorchorus capsularis35.9928.3484.29140forward
CNT3068683Leersia perrieriQuercus suber73.7858.3382.23287forward
CNT30524728Leersia perrieriPhaseolus vulgaris83.0359.8179.57323forward
CNT30504810Leersia perrieriNicotiana attenuata45.527.1982.49177forward
CNT30636701Leersia perrieriCapsicum annuum48.5945.9982.01189forward
CNT3091042Leersia perrieriSolanum tuberosum32.3934.5282.54126forward
CNT30182233Leersia perrieriSecale cereale98.7161.7493.75384forward
CNT30289293Leersia perrieriTriticum aestivum33.1642.4383.72129forward
CNT30222279Leersia perrieriHordeum vulgare76.8699.0193.65299forward
CNT30590847Leersia perrieriMusa acuminata88.9575.7182.37346forward
CNT30539234Leersia perrieriBrassica napus50.6421.5381.22197forward
CNT30510868Leersia perrieriSolanum lycopersicum35.9967.3182.86140forward
CNT30143812Leersia perrieriMedicago truncatula42.1613.2685.98164forward
CNT30246244Leersia perrieriAvena sativa98.7147.1793.23384forward
CNT30261302Leersia perrieriBrassica rapa81.4961.3279.18317forward
CNT30457014Leersia perrieriSaccharum spontaneum98.7150.2692.97384forward
CNT30134072Leersia perrieriLolium perenne98.7152.8991.93384forward
CNT30653881Leersia perrieriRosa chinensis52.1919.0181.28203forward
CNT30713695Leersia perrieriMalus domestica golden37.7932.5983.67147forward
CNT30338563Leersia perrieriEragrostis tef97.6991.7990.26380forward
CNT30477892Leersia perrieriArabidopsis halleri81.7529.7279.25318forward
CNT30363710Leersia perrieriSorghum bicolor58.6138.8487.28228forward
CNT30595456Leersia perrieriOryza meridionalis97.6966.6795.26380forward
CNT30360575Leersia perrieriLactuca sativa58.3537.6580.62227forward
CNT30424172Leersia perrieriPapaver somniferum36.7620.4985.31143forward
CNT30570592Leersia perrieriVitis vinifera25.9631.2782.18101forward
CNT3054595Leersia perrieriAmborella trichopoda52.1998.0782.76203forward
CNT30105598Leersia perrieriOryza longistaminata62.9835.5686.12245forward
CNT30325711Leersia perrieriAsparagus officinalis67.6182.4585.17263forward
CNT30102778Leersia perrieriOryza rufipogon14.6522.5387.7257forward
CNT30574680Leersia perrieriOryza barthii59.3825.2286.15231forward
CNT30580107Leersia perrieriEchinochloa crusgalli98.7173.9993.75384forward
CNT30497454Leersia perrieriDigitaria exilis95.6310092.47372forward
CNT30115589Leersia perrieriOryza nivara59.3816.1986.15231forward
CNT30594668Leersia perrieriEragrostis curvula80.4692.8892.01313forward
CNT30603506Leersia perrieriOryza punctata96.9275.183.02377forward
CNT30174824Leersia perrieriVigna angularis78.4132.1181.31305forward
CNT30550386Leersia perrieriOryza brachyantha47.366.9187.5184forward
CNT30336663Leersia perrieriCynara cardunculus41.3934.4883.85161forward
CNT30723923Leersia perrieriLupinus angustifolius50.3995.6183.16196forward
CNT3064271Leersia perrieriSelaginella moellendorffii62.7244.3681.56244forward

Expression of CNT3066796

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MGSTTSWRSSSNLGFRRWCATFSFLPVKKLSTTITLSPCSSSLSTRWLPTNP

Sequence

>CNT3066796
ACCTATAGGGTTAACATGCCCCCAGTAAGTCTCTTTCTGTGGATGCTCAAGAGGATCTCCATAGACCTCACTTGTGCTAGTTAACAAGAACCTTGCACCA
ATTCGCTTTGCCAGACCCAACATATTCAAGGTCCCCATGACATTTGATATGATCGTCTTGATGGGGTTATACTTGTAGTGCACGGGCGACGCGGGGCACG
CGAGGTGATAGATCCGGTCGACCTCGAGCAGGATGGGCTCGACGACATCGTGGCGGAGCAGCTCGAACCTGGGGTTCCGGAGGTGGTGCGCGACGTTCTC
CTTCCTCCCCGTGAAGAAGTTGTCCACCACGATCACGCTGTCCCCCTGCTCCAGCAGCCTGTCTACAAGGTGGCTGCCGACGAATCCAG