« Back to Leersia perrieri search


Detailed information on CNT3066768


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690742Leersia perrieriOryza sativa36.3635.8291.67120forward
CNT30674803Leersia perrieriSetaria viridis32.4220.7885.98107forward
CNT30552193Leersia perrieriOryza glaberrima36.3634.9990120forward
CNT30369269Leersia perrieriOryza glumipatula36.3628.7891.67120forward
CNT30107444Leersia perrieriOryza longistaminata37.8812.2391.2125forward
CNT3099509Leersia perrieriOryza rufipogon4018.4190.91132forward
CNT30574818Leersia perrieriOryza barthii38.1817.4890.48126forward
CNT30115661Leersia perrieriOryza nivara35.1523.5889.66116forward

Expression of CNT3066768

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSYHLHSSSSSSSSSSSAPADELRAFNLSTSLAFLCS*

Sequence

>CNT3066768
GAAATATAAGATTGCATAAAAGAGGATAAAACATAAATCATAGCTCAGTAACAGAACAAATACGCCAAATATCCAAAAGATAGCGCACCGCACACAATTA
AGATAATCCACAGCTCCAGGTCGATAACCAAAAACTGAAAGAAACAGGTTCACTGAGCATAGTGCATAACGATAAACTACTGTGATGAGCTACCATCTTC
ACTCGTCATCCTCTTCCTCATCCTCATCATCATCAGCGCCAGCGGACGAGTTGAGAGCATTTAACCTTTCAACGAGCCTGGCCTTCCTCTGCTCGTAGGT
CAGCTTCTTGAGGTTGTACCTGCAACAAAG