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Detailed information on CNT30667558


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000950, E-value = 2e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677703Triticum dicoccoidesSetaria viridis31.5100.8494.74361forward
CNT3046714Triticum dicoccoidesPrunus dulcis17.2892.9687.88198reverse complement
CNT30600961Triticum dicoccoidesFraxinus excelsior7.0723.6288.8981forward
CNT30364089Triticum dicoccoidesSorghum bicolor32.7282.691.47375forward
CNT30113381Triticum dicoccoidesFicus carica17.4544.8497.5200reverse complement
CNT30725732Triticum dicoccoidesLupinus angustifolius21.0353.4493.78241forward

Expression of CNT30667558

Peptides detected in this lncRNA

>peptide 1 (49 aa)
VESVAVSNRDCVGVRSCSTLSKIMHWMDARALRRKDAFRGERPWGEIFL*

>peptide 2 (31 aa)
WKVLLCQIEIVWVSAHVRRYRKSCIGWMPGH*

>peptide 3 (34 aa)
MGRDFSVIHGSPIGKPYPSSMASLRSLDFSNLAN*

>peptide 4 (39 aa)
GKCCCVKSRLCGCPLMFDAIENHALDGCPGIEKEGRFQR*

Sequence

>CNT30667558
GTGGAAAGTGTTGCTGTGTCAAATCGAGATTGTGTGGGTGTCCGCTCATGTTCGACGCTATCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAA
GGAAGGACGCTTTCAGAGGTGAAAGGCCATGGGGAGAGATTTTTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCATGGCTAGTCTG
CGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCATTAGTAGCGGCGAGCGAGAGCGGA
ACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGTTAGAAAAGT
TGCCGTAGCGCGCCCTACGGAGTTGTACAAAGTCAGCAACCCTTTTGGGGCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAA
CTGGTTTTCTAAAAAGATTGGAAGATCCAGCCAAAGAAGGTGATAGCCCTATTCATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTC
GAATGATGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAA
AGAACCCCAATCAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCTGGCGCACTCACTCTAACGGCGTACCTT
TCGCATGATGGGTCAGCGAGGAAATGGGAACAGCAGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACGTTCTTCCTATTTGACCCG
AAACCGATCGATCTAGCCATGAGCAGGTTGAAAAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAAAACGGGGATGACTTGTGGCT
AGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATG
GGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCCAGGGAAACTCC