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Detailed information on CNT30667276


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225098Triticum dicoccoidesHordeum vulgare27.9553.694.63149forward
CNT30396861Triticum dicoccoidesTriticum turgidum10073.21100533forward
CNT30253461Triticum dicoccoidesAvena sativa24.5815.2790.84131forward
CNT30460356Triticum dicoccoidesSaccharum spontaneum23.2625.8983.87124forward
CNT30143360Triticum dicoccoidesLolium perenne21.3912.9190.35114forward
CNT30686240Triticum dicoccoidesTriticum urartu70.7381.9687.8377forward
CNT30722257Triticum dicoccoidesTriticum spelta63.691.1387.32339forward
CNT30149601Triticum dicoccoidesBrachypodium distachyon23.6414.0591.27126forward
CNT30584129Triticum dicoccoidesEchinochloa crusgalli23.2628.9783.06124forward
CNT30556342Triticum dicoccoidesPanicum hallii23.457.9486.4125forward

Expression of CNT30667276

Peptides detected in this lncRNA

>peptide 1 (30 aa)
TLSLKSRHKSFTPVPPRSPCASFTCVPLPA*

>peptide 2 (41 aa)
MDPPPAQSMSATDDLHDKSLDGCCSCCYDCCSSILDFLCCA*

>peptide 3 (85 aa)
MCVIYLRSPSSLTASIPLASALCLAAPFRRCLLPHIIIVARPQTRRDRLGHGSPACSVHVRDRRSPRQEPRRMLFLLLRLLLQHP*

Sequence

>CNT30667276
ATACCTTAAGCCTTAAATCCCGGCACAAGAGCTTTACACCGGTACCGCCGCGCAGTCCATGTGCGTCATTTACTTGCGTTCCCCTTCCAGCTTAACTGCC
TCCATACCCCTCGCCTCTGCCCTTTGCCTTGCAGCACCATTCCGCCGTTGCCTTCTTCCCCACATCATCATCGTCGCCCGTCCACAGACGCGGAGAGACC
GACTTGGCCATGGATCCCCCGCCTGCTCAGTCCATGTCCGCGACCGACGATCTCCACGACAAGAGCCTCGACGGATGCTGTTCTTGCTGCTACGACTGCT
GCTCCAGCATCCTTGACTTCCTGTGCTGCGCTTGATGCCCCTCCTGCCGTTCCACGGCATCCGGTGGAAGCGGAGGCGCGCGGAGAGGCCTGAGTTAGTA
TTTCAGAGTACTATATAGTCATTGTGTGAGTATATTTTACATAGCCTGTATGTAATAAGGAGATTTATGGATCAACTGCTGTAATGTGTCGACTTATCTA
TTCTCAAAAAGAAATGCGTTGACTTATCTTCCC