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Detailed information on CNT30666046


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 3e-123

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298862Triticum dicoccoidesTriticum aestivum94.1285.9899.31865forward
CNT30394891Triticum dicoccoidesTriticum turgidum92.7194.0497.42852forward
CNT30369293Triticum dicoccoidesOryza glumipatula60.6158.9490.31557forward
CNT3099595Triticum dicoccoidesOryza rufipogon52.5655.8492.13483forward
CNT30603457Triticum dicoccoidesOryza punctata53.2150.9993.46489forward

Expression of CNT30666046

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSQP*

>peptide 2 (37 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIANFE*

>peptide 3 (35 aa)
MQHLSVRTTQSHNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30666046
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGA
CTCGCGCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCACAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGC
CATGAAGTTGTCGGCCTAGAGGTTGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGA
GCGGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTG
CGCGTGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCG
TTGCGGGCGAGCAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGG
GGTCGGCGGAGAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCAC
GCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCCCCGAAGGGCGCCGCCCTG
GAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCTAACTTCGAGTGAGCTGAGGCTGACAGTAGGAGGC
GCTGGTGGTCGTTGGTGAC