Detailed information on CNT3066602


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000626, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552010Leersia perrieriOryza glaberrima12.7722.0992.4171reverse complement
CNT30595602Leersia perrieriOryza meridionalis21.9621.785.71294forward
CNT30109999Leersia perrieriOryza longistaminata27.8628.5286.6373forward
CNT3099527Leersia perrieriOryza rufipogon27.3323.9586.34366forward
CNT30574602Leersia perrieriOryza barthii29.5733.9692.17396reverse complement
CNT30115488Leersia perrieriOryza nivara27.8629.3986.33373forward
CNT30550371Leersia perrieriOryza brachyantha57.3628.6584.77768forward

Expression of CNT3066602

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MWKLLFSVLCFDLLWSFSKYIPCFCVAFGAYRFYE*

>peptide 2 (33 aa)
MGFMQAAVSGHCWGREESRRRVLHGRCCVWLHL*

>peptide 3 (43 aa)
MNNNLDDEHSLDVFGWLDKAWDGKLFLVVITQSKSCVIDLLSS*

>peptide 4 (40 aa)
MTGQVLVRHKRYSRLHKESTSSDYYYCKTEELIHYDPFNQ*

>peptide 5 (68 aa)
MEKEGLPKLFSCPTWPSTCLEARGYPISVAPVVEASSIFNTTVKLRGSEKLRALHGLHAGSGVRPLLG*

>peptide 6 (30 aa)
MIHSINRNPGIDTPLPSLHRDGEGRPAKVV*

Sequence

>CNT3066602
CCGCAGTTTCACAGACCATATCACCATAAGACTAAAATAGCGTTGTAACTAGGACCATGAAGTCAATTTTGTGTCTACAAGCCCCTGAATTAATCCTGTT
CAATCAATTATGGAAACTCTGTTACTATATCTAAGATAACTTTTGTACTAATACGATTCTAAAGATCTTAGTATGAAATCTTATTTAACACATTGTGCAA
GTATAGCAGTATTATATCCTCTTCTGCTGGGGCTTTGCAATTCCCAGATAACATAACAGTAACCAAACACTCACTTGAGTTTTCCAACTAAAGTATGCAG
AAAAGATGACAGGTCAAGTACTAGTTCGCCACAAAAGATACAGTAGACTCCACAAGGAGAGCACTAGTTCTGATTATTACTATTGCAAAACAGAAGAACT
GATACATTATGATCCATTCAATCAATAGAAATCCGGGAATAGACACTCCATTACCATCTTTGCATCGAGATGGAGAAGGAAGGCCTGCCAAAGTTGTTTA
GTTGCCCTACATGGCCTAGCACCTGCCTAGAGGCTAGAGGATATCCGATCTCCGTAGCACCTGTTGTTGAGGCGTCGTCGATCTTCAACACCACCGTGAA
GCTAAGAGGTAGTGAGAAACTGAGAGCACTGCATGGGCTTCATGCAGGCAGCGGTGTCAGGCCATTGTTGGGGTAGAGAGGAATCCAGGAGAAGGGTCCT
CCATGGAAGATGCTGTGTTTGGTTACATTTATAGAGAATATATGAGGTTTCTATCATAAAGTGGAAGCTTAGGTGGTGGAGTGCCTTTTTGCAGACCGAA
ATGAGGTATCTTCCTTAGCATATTCCATAGCATGTGGAAACTTCTTTTTTCTGTTCTATGCTTTGATTTGCTTTGGAGTTTTTCAAAGTATATTCCATGC
TTTTGTGTGGCTTTTGGGGCCTATAGGTTTTATGAATAATAATTTAGATGATGAACACTCTCTGGATGTATTTGGGTGGCTTGACAAAGCATGGGATGGA
AAGTTGTTTTTGGTGGTGATCACCCAGAGCAAATCTTGCGTCATAGACCTACTTAGCAGCTGAAGAGTTTTGGTTTGTATTGCATTGTGCCTGTCAGATC
AGTGCTGTATTTGATGCACTGTTATCATTTATACATGAAATGAAATACAAGAACCATATCCAGATCGCAGAACAAATTATTTTTCCATCAAAAAAGGGTG
AGCTTTTATAAGAACTATATTTATTGCCTTGTGGTGCCCTGCTGTTTGACAATGTGAATTGGTGCGAGACACTGGCATCTGATCTGGCCCGGGCCTGTGT
GGCTGTTGTAATCGAACTTGACTAGGGCCTTTCTGGCTG