Detailed information on CNT3066598


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674416Leersia perrieriSetaria viridis14.6225.9693.1888forward
CNT30552242Leersia perrieriOryza glaberrima18.7726.991.15113forward
CNT3014691Leersia perrieriZea mays12.7926.8393.5177forward
CNT30595608Leersia perrieriOryza meridionalis39.246.3786.02236forward
CNT30574883Leersia perrieriOryza barthii18.7733.4391.15113forward
CNT30115583Leersia perrieriOryza nivara18.7727.2390.27113forward
CNT30603545Leersia perrieriOryza punctata18.7721.4492.92113forward

Expression of CNT3066598

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTTTTTGTPFTQLHTCTHIYVHKLGCSMRVTLSRT*

>peptide 2 (57 aa)
MLDACDAQSDLSRKLSLRSWNSPVQVLTSSSTLVSRTTKWSLPWWKLGFTDLTSSEQ*

Sequence

>CNT3066598
AGACGGAAGCAGTCGACTGGCTGCGGTGTTTTGGTTTCATCAATTCATCATAATTGCCACACACGTACAGTACTAACTCAGTAACACACTTGGAATAAAT
ATAATCATACTGATTTAACAATAACCAGGACATTAATTAATCTTTATTCAGGTCACGAGTTTATTTTCATAACCCCCTCTGTTCGTAGCTCGTACAGAGA
AGTGCTAGCTCCGTGTACGCACGCACGCACACGCACGATATACACGTAAGCCACATGACCACCACGACTACGGGCACGCCCTTTACACAATTACACACTT
GCACACACATATACGTACACAAGCTCGGATGCTCGATGCGTGTGACGCTCAGTCGGACCTGAGCAGGAAGCTCTCCTTGCGCTCGTGGAACTCGCCGGTG
CAGGTGTTGACGTCCTCCTCCACCCTGGTCTCGCGAACCACAAAGTGGTCGTTGCCGTGGTGGAAGTTGGGTTTCACCGACCTCACCTCCTCCGAGCAGT
AGTCCACCTCCTGGTAGTGTGCCATGGTGTGTGTGTGAGGTGGTTGTGATGAGCAAACGATGGTTACTTAGGGTTGGGTGCTGTGGTGGTGGTGGTGTAG
GG