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Detailed information on CNT30665882


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 8e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520889Triticum dicoccoidesSetaria italica16.8121.3287.74155forward
CNT30300099Triticum dicoccoidesTriticum aestivum85.7910099.75791forward
CNT30597191Triticum dicoccoidesOryza meridionalis14.6446.5594.07135forward
CNT30151009Triticum dicoccoidesBrachypodium distachyon36.9866.688.27341forward
CNT30115743Triticum dicoccoidesOryza nivara35.929.6184.29331forward

Expression of CNT30665882

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

>peptide 2 (69 aa)
MSRKTETMLFTCMHLILPPLLTLPRLAPLERRLTGRPAVDLSPWKGATEVADEAITVGAMAVLCRYIAC*

>peptide 3 (79 aa)
MCMCIYIAIGSIHIRACFLESCREHGHTHILILGTNKKDKWKRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

Sequence

>CNT30665882
TTCTCATTAATTACCCAAATACATAGTCGACAGATTGTACTTATAATATTATGTGCATGTGCATATACATAGCCATCGGTAGCATTCACATACGAGCATG
CTTTCTCGAGTCATGTCGGGAACATGGACATACACATATTCTTATCTTAGGAACAAACAAGAAAGATAAATGGAAAAGGAAAACCCAAAGCAATGTCAGA
GTTGACAAAACCGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAA
GCTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACATACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGC
GTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCATCATAGTACCCAGGGGATGCGTTGTGCTCACGGAAGATGAACCCAA
CCTTGCTGAACTCGAGGCAAGGCACCCACTTGGAGCGGATCAGGTAGGACAGGGTCTCGAACTTCTTAATGCCCTCGATGGGCCACACCTGCAAATAAGA
TTGACATTTTTGATACATTAACAGGCTAGAATTCTAGTTCTACACAATTGATGTTATTGACTTCCGTCCGTCAGCTAGAAAATGAGTAGAAAGACAGAGA
CGATGTTGTTTACCTGCATGCACCTGATCCTTCCACCGTTGCTGACGCTGCCGAGGCTAGCGCCGTTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGGA
CTTGAGCCCCTGGAAAGGAGCGACGGAGGTGGCCGACGAGGCCATCACGGTGGGGGCCATGGCTGTACTATGTAGGTATATAGCTTGCTAGGAGGAGGCA
CTCTGGCTTGAGGACTGCTGCG