« Back to Triticum dicoccoides search


Detailed information on CNT30665496


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 4e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30393705Triticum dicoccoidesTriticum turgidum67.4851.7699.15471forward
CNT30148465Triticum dicoccoidesBrachypodium distachyon52.0146.7892.56363forward
CNT30577551Triticum dicoccoidesOryza barthii52.7242.8992.93368forward

Expression of CNT30665496

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSKEFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

>peptide 2 (43 aa)
MAMAVALQARWFLAREEMGGGAEATRARGRWGCVWWVMSRRDG*

Sequence

>CNT30665496
TTCAAACTCGACAATTAAAATTACAGGACGTCCATCATCATCGCCACCCGCCAATAACTACCGGTCGATGAACTAGCACGTACGCATATACGACGTACGA
GATTAGATGTCGAAGGAGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGCCCCACGCCCTGCCTGCCGG
CGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCGTTGGGGAAGACGCGGTAGAACTGGTAGGCGATCTTGTACTTGGA
GCGGAGGCGGTTGCCGAGGGCGAGCTTGAGGAGGTTGGGCCCCTCGCGCATGATGGCGGCGCCGCCAGTGGGCATCTCGAAGACCTGCTCCTTGGGGGAG
GTCCAGGTGATGACGTAGAACTCCTCGACCTGGGCCTTGCGGAGGAGGCCGCCCGTGCTGCCGCCGAAGATCGGGGACGGGGGTGGCGGGGCGGGGCTTG
GCGGAGGGCGACCAGGCCGCGGTGATCAGGTGGCGCGTCGCCGCCGAGGCTTGCGTGGCCATGGCCATGGCGGTGGCGCTCCAAGCTCGGTGGTTCTTGG
CGAGAGAGGAGATGGGGGGAGGAGCCGAGGCCACACGCGCGCGCGGGAGATGGGGTTGTGTCTGGTGGGTGATGAGTAGGAGAGATGGCTGAGCTAAG