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Detailed information on CNT30665401


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 9e-149

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30246635Triticum dicoccoidesAvena sativa64.29103.0785.91504forward
CNT30116862Triticum dicoccoidesOryza nivara86.164.6685.63675forward

Expression of CNT30665401

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADNPAVSHP*

>peptide 2 (63 aa)
MLWGALLTVRRMVMRPPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACELSEMNWWMV

>peptide 3 (72 aa)
LRTLTLSSAAVFRSSSRPSGSKRFSTGPFPVTMACTKKPNMENMARRPFLSSFTLSSAAVSGPSPRGPPPTR*

Sequence

>CNT30665401
TCTTGAGAACTTTGACCTTGAGCTCAGCCGCGGTGTTTAGGTCGTCGTCGAGGCCAAGTGGGTCGAAGAGGTTCTCAACGGGTCCCTTTCCGGTGACGAT
GGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGCCCTCGCCGAGG
GGGCCGCCACCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGC
CCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAA
CACGCACCCCAGGGCGCCGAGCATCGCCCACCGTGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCAGCCGACAATCCGGCGGTG
TCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGTACGTACCAGATGCTCTGGG
GCGCGCTCTTGACGGTCCGGCGCATGGTGATGCGGCCGCCGAAGTCGCCGACGCTGCGGACGAGGTCATCGCGCCGCGGGGCGGTGCCGAGGAAGCTGGT
CGTCTGGTGCAGCGCCGACGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCTCAGTGAGATGAACTGGTGGATGGTGTG