Detailed information on CNT3066527


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30540600Selaginella moellendorffiiBrassica napus99.7648.8383.07833forward
CNT30311205Selaginella moellendorffiiCamelina sativa96.7771.3282.92808forward
CNT3073349Selaginella moellendorffiiBrassica juncea99.474.6483.49830forward
CNT30623964Selaginella moellendorffiiDaucus carota99.6440.3983.17832forward
CNT30326890Selaginella moellendorffiiAsparagus officinalis99.7667.584.27833forward
CNT30330418Selaginella moellendorffiiDioscorea rotundata96.0580.0482.79802forward
CNT30174676Selaginella moellendorffiiVigna angularis93.0572.5585.07777forward

Expression of CNT3066527

Peptides detected in this lncRNA

>peptide 1 (69 aa)
LLPGKDETLLVRRNAFFILDLGLHIVDGVRALHLQGDGLAGESLDENLHASTEPEDEMEGRLLLDVVVG*

>peptide 2 (61 aa)
MRRCWSGGIPSLSWILVLTLSIVSELSTSRVMVFPVSVLTKICIPPRRRSTRWRVDSFWML*

>peptide 3 (66 aa)
CFPAKMRRCWSGGMPSLSWILVFTLSMVSELSTSRVMVLPVRVLTKICMPPRSRRTRWRVDSFWML*

>peptide 4 (30 aa)
MVLPVRVFTKICIPPRSRRTRWRVDSFWML*

Sequence

>CNT3066527
GCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTATCCTGGATCTTGGTCTTCACATTGTCGATGGTGTCCGAGCTCTCCAC
CTCCAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAAATCTGCATGCCTCCACGGAGCCGGAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTG
TAGTCGGCTAGAGTCCTGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTAGTCTTGA
CGTTGTCAATCGTATCCGAGCTCTCCACCTCCAGAGTGATGGTCTTCCCTGTAAGTGTCTTGACAAAGATCTGCATCCCTCCACGAAGACGAAGCACAAG
GTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCCAAGGTGCGTCCATCCTCGAGCTGCTTCCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGAATT
CCTTCCTTGTCCTGGATCTTCGTCTTGACGTTGTCAATAGTGTCCGAGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATTT
GCATCCCGCCGCGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTCCTGCCGTCCTCTAGCTGCTTACCTGCAAA
GATGAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATCTTCGTCTTAACGTTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATCGTC
TTGCCAGTCAGGGTTTTCACAAAGATCTGCATCGC