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Detailed information on CNT30665254


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 3e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186317Triticum dicoccoidesSecale cereale72.9272.7796.7727forward
CNT30299182Triticum dicoccoidesTriticum aestivum94.4888.6299.26942forward
CNT30394515Triticum dicoccoidesTriticum turgidum50.2560.9599.2501forward
CNT30440100Triticum dicoccoidesAegilops tauschii94.1892.0698.3939forward
CNT30250793Triticum dicoccoidesAvena sativa70.3168.7392.58701forward
CNT30362364Triticum dicoccoidesSorghum bicolor56.8755.792.95567forward
CNT30596886Triticum dicoccoidesOryza meridionalis59.0857.8693.89589forward
CNT30603531Triticum dicoccoidesOryza punctata62.9957.6193.79628forward

Expression of CNT30665254

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 2 (35 aa)
MQHLSVRTTQSHNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 3 (37 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIANFE*

>peptide 4 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSQP*

Sequence

>CNT30665254
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGA
CTCGCGCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCACAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGC
CATGAAGTTGTCGGCCTAGAGGTTGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAG
GTGGTCGGCGAGGTTCTCCAGGGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCC
TTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCGAGCGGGC
CGCCGGCGACGCGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAA
GACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGGTG
TCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGC
TGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGC
CATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCTAACTTCGAGTGAGCTGAGGCTGACAGTAGGAGGCGCTGGTGGTCGTTGGTGACT