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Detailed information on CNT3066524


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-133

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528694Selaginella moellendorffiiEucalyptus grandis91.552.7288.81581forward
CNT30540607Selaginella moellendorffiiBrassica napus92.2839.784.3586forward
CNT30120625Selaginella moellendorffiiCitrus clementina71.3441.4887.64453forward

Expression of CNT3066524

Peptides detected in this lncRNA

>peptide 1 (63 aa)
ETLLVRRNAFFILDLGLHIVDGVRALHLQGDGLAGESLDENLHASTEPEDEMEGRLLLDVVVG*

>peptide 2 (38 aa)
MVSELSTSRVIVLPVRVFTKICIAAAERSLQSRKKTINR

>peptide 3 (61 aa)
MRRCWSGGIPSLSWILVFTLSIVSELSTSRVMVLPVRVFTKICMPPRSRRTRWRVDSFWML*

>peptide 4 (60 aa)
RRCWSGGMPSLSWILVFTLSMVSELSTSRVMVLPVRVLTKICMPPRSRRTRWRVDSFWML*

>peptide 5 (29 aa)
DAAGPEECLLYPGSWSSHCRWCPSSPPPG*

Sequence

>CNT3066524
GAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTATCCTGGATCTTGGTCTTCACATTGTCGATGGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTCTTG
CCGGTGAGAGTCTTGACGAAAATCTGCATGCCTCCACGGAGCCGGAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGAGTCCTGC
CGTCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCTTCTTTGTCCTGGATCTTGGTCTTCACGTTGTCAATCGTGTCCGA
GCTCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGCCTCCACGAAGCCGCAGGACGAGGTGGAGGGTCGACTCCTTC
TGGATGTTATAGTCCGCCAAGGTCCTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATCT
TCGTCTTAACGTTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCGCTGCTGCCGAAAG
AAGCCTACAGTCTCGCAAAAAGACGATAAATCGAT