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Detailed information on CNT30664642


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 2e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671434Triticum dicoccoidesSetaria viridis49.7946.2391.57356forward
CNT30685205Triticum dicoccoidesTriticum urartu101.8288.7897.8728forward

Expression of CNT30664642

Peptides detected in this lncRNA

>peptide 1 (46 aa)
THQLLISTRPHMQHLPVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (55 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGGR

>peptide 3 (68 aa)
TPTPHLDSPSHATSTSPDYSISEREEAEIDDDTHAAASISHEVVGLELELTALTCRGRSWWRRPRRCC*

>peptide 4 (41 aa)
HTNSSSRLALTCNIYQSGLLNLRTGRSRDRRRHTCSSIHQP*

Sequence

>CNT30664642
ACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTACCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACAC
ACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCT
GCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATG
GCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACC
ACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGT
GCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGA
GGCGCTGGTGGTCGT