Detailed information on CNT30664570


BLAST search results

BLAST vs Swiss-Prot:
sp|P12333|CB2A_SPIOL, E-value = 5e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30456340Triticum dicoccoidesSaccharum spontaneum60.1168.9491.65455forward

Expression of CNT30664570

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (41 aa)
HTNSSSRLALTCNIYQSGLLNLRTGRSRDRRRHTCSSIHQP*

>peptide 3 (30 aa)
MACTKKPNMENMARRPFLISFTLSSAKASG*

>peptide 4 (68 aa)
TPTPHLDSPSHATSTSPDYSISEREEAEIDDDTHAAASISHEVVGLELELTALTCRGRSWWRRPRRCC*

>peptide 5 (55 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGGR

>peptide 6 (46 aa)
THQLLISTRPHMQHLPVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30664570
ACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTACCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACAC
ACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGC
GAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTAGTCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGC
TCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGC
CGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCG
GCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTG
CTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGT