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Detailed information on CNT3066366


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 5e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513311Selaginella moellendorffiiJuglans regia77.6155.4184.12655forward
CNT30311067Selaginella moellendorffiiCamelina sativa81.0454.1684.5684forward

Expression of CNT3066366

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MRESGEVFIRMEERLFEMTWERVFRLGHHGDEGRDGGSTLSGCYNLPEYAHPRAASRQR*

>peptide 2 (48 aa)
MEGRLFLDVIICQSTPILELLPGKDETLLVRRNAFLVLDLGLDVVDGV*

>peptide 3 (30 aa)
MVLPVRVFTKICIPPRSLRTRWRVDSFWML*

>peptide 4 (33 aa)
MVSELSTSRVIVLPVRVFTKICIVAAEISLQSQK

>peptide 5 (61 aa)
MRRCWSGGMPSLSWILVLTLSMVSELSTSRVIVFPVSVLTKICIPPRRRSTRWRVDSFWML*

Sequence

>CNT3066366
TGCTAGATACAAATTGACGGGTGAAGATCATTATAAATCAAACAGATGAGAGAAAGCGGTGAGGTTTTTATTAGAATGGAAGAGAGGTTATTTGAAATGA
CATGGGAGAGAGTGTTTAGGCTTGGCCACCACGGAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTACGCCCATCC
TCGAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCTCT
CCACCTCCAGAGTGATCGTCTTCCCTGTGAGTGTCTTGACAAAGATCTGCATCCCTCCACGAAGACGAAGCACAAGGTGGAGGGTCGACTCCTTCTGGAT
GTTATAGTCCGCCAAGGTGCGTCCATCCTCGAGTTGCTTCCCAGCGAAAATAAGTCGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTCGTC
TTGACGTTGTCAATAGTGTCCGAGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCATCCCGCCGCGCAGCCTCAGGA
CGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCTAAGGTCCTGCCGTCCTCTAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGG
AATCCCTTCTTTGTCCTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAG
ATCTGCATCGTTGCTGCCGAAATAAGCCTACAGTCGCAAAAAGC