Detailed information on CNT30662940


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 2e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184672Triticum dicoccoidesSecale cereale47.3156.0696.22185forward
CNT30223445Triticum dicoccoidesHordeum vulgare78.5272.4195.11307forward
CNT30390938Triticum dicoccoidesTriticum turgidum74.4255.4399.66291forward
CNT30137065Triticum dicoccoidesLolium perenne70.0859.9689.42274forward
CNT30721254Triticum dicoccoidesTriticum spelta81.0756.9199.68317forward

Expression of CNT30662940

Peptides detected in this lncRNA

>peptide 1 (35 aa)
SIWFLTMMKTISEITQVAVVRYSHQKSERSCFFCP*

>peptide 2 (72 aa)
MLLHRAHAADHQQPTAADGQSTASSQAGHPLGGAGDDGEQVVAEGVAEVRAQVLEGAERVEWATGVELVVKFL

>peptide 3 (37 aa)
MTVSRLLPKGSLRCAHRFSKGPSGSNGPPGWSLSSNSC

>peptide 4 (51 aa)
VNLVFNDDENHFRNYSSSSGPILPSEIRTVMFLLPLIIYTYGTFVLSNFSR*

Sequence

>CNT30662940
GTCAATCTGGTTTTTAACGATGATGAAAACCATTTCAGAAATTACTCAAGTAGCAGTGGTCCGATACTCCCATCAGAAATCAGAACGGTCATGTTTCTTC
TGCCCTTGATAATTTACACGTACGGCACATTCGTACTCTCAAACTTTTCCCGGTAAAATTCACACAGCACATGCTGCTGCATCGCGCGCACGCAGCTGAT
CATCAGCAACCGACGGCGGCGGACGGGCAATCAACGGCCAGCTCACAGGCTGGGCACCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCG
AAGGGGTCGCTGAGGTGCGCGCACAGGTTCTCGAAGGGGCCGAGCGGGTCGAATGGGCCACCGGGGTGGAGCTTGTCGTCAAATTCCTGCC