Detailed information on CNT30662351


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677121Triticum dicoccoidesSetaria viridis15.4420.6590.2482forward
CNT30295231Triticum dicoccoidesTriticum aestivum98.8710099.62525forward
CNT30392448Triticum dicoccoidesTriticum turgidum95.197.1298.61505forward
CNT30258377Triticum dicoccoidesAvena sativa91.3471.1184.33485forward
CNT30136185Triticum dicoccoidesLolium perenne103.018385.92547forward
CNT30352984Triticum dicoccoidesEragrostis tef35.5932.3186.77189forward

Expression of CNT30662351

Peptides detected in this lncRNA

>peptide 1 (57 aa)
QCLCSRVATPTRRSVHPKCLSLFITQAIQMVPVFHLSFFSWNLISSSSYPIIIYSNQ*

>peptide 2 (40 aa)
MFFKSQLSSFPLEASHMPASDQDPSEAYPSHPSEAYPCRP*

>peptide 3 (43 aa)
GSVYVHGWQHQHGGVYTQNVLVFLSHKLYKWYQSSTSHSSAGT*

Sequence

>CNT30662351
GGCAGTGTTTATGTTCACGGGTGGCAACACCAACACGGAGGAGTGTACACCCAAAATGTCTTAGTCTTTTTATCACACAAGCTATACAAATGGTACCAGT
CTTCCACCTCTCATTCTTCAGCTGGAACCTAATCTCATCCTCATCCTACCCGATCATAATATATAGCAACCAGTAAATTTACTCTACCTCGGCTAGAAAT
ATTGCTCGCCAAAATTGCCCTGGTACCAAAAGAATATTAACTGAAACAACCAATAGCCCAAATCAATCTACAACTTGAAAGATACCTTTGGGATCCTCAT
GCTCCCTCTGTAAAAAAAGACTGAAACAATCGACATCATCTATGTTCTTCAAAAGCCAACTCAGTAGTTTCCCATTGGAGGCATCCCATATGCCGGCATC
GGACCAGGACCCATCGGAGGCATACCCATCCCACCCATCGGAGGCATACCCATGCCGCCCATAGGAGGTGGACCCCCCATACCAGGCGGAGCAGGCAAGG
CGAGAGGGAGCAATTGAGCGTACATGTTCTG