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Detailed information on CNT30662247


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526003Triticum dicoccoidesPhaseolus vulgaris36.7312.8793.65126forward
CNT30394116Triticum dicoccoidesTriticum turgidum62.9752.1797.69216forward
CNT30555411Triticum dicoccoidesOryza glaberrima53.6445.6697.83184reverse complement
CNT3067405Triticum dicoccoidesLeersia perrieri38.4831.8893.18132forward
CNT30650379Triticum dicoccoidesRosa chinensis24.7810.9592.9485reverse complement
CNT30203328Triticum dicoccoidesHelianthus annuus63.8526.6194.52219forward
CNT30371139Triticum dicoccoidesOryza glumipatula49.2734.1496.45169reverse complement
CNT30409295Triticum dicoccoidesPapaver somniferum61.5237.3593.84211forward
CNT30101010Triticum dicoccoidesOryza rufipogon49.5623.2295.88170forward

Expression of CNT30662247

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VRSWLRMNVGGMLNTCKSNGKWCFQWRTGE*

>peptide 2 (52 aa)
MEGLTSDLLVGELLPHQLANHTRAPPWVDFSFCSSAYGVLATVSSCCSPPKGR

Sequence

>CNT30662247
GTTCGATCCTGGCTCAGGATGAACGTTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAA
GAACCTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCACCCATGGAGGGGCTCACGTC
TGATTTGCTAGTTGGTGAGCTATTACCTCACCAACTAGCTAATCACACGCGAGCCCCTCCTTGGGTGGATTTCTCCTTTTGCTCCTCAGCCTACGGGGTA
TTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGT