Detailed information on CNT30661738


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3073023Triticum dicoccoidesQuercus suber26.328.4685.5376reverse complement
CNT30709610Triticum dicoccoidesGlycine max21.455.5891.9462forward
CNT30190568Triticum dicoccoidesSecale cereale84.788.694.29245reverse complement
CNT30437581Triticum dicoccoidesAegilops tauschii96.8991.895.36280forward
CNT304540Triticum dicoccoidesZea mays21.86.4590.4863forward
CNT30326712Triticum dicoccoidesAsparagus officinalis26.998.9384.6278reverse complement
CNT30148832Triticum dicoccoidesBrachypodium distachyon28.0315.7687.6581forward

Expression of CNT30661738

Peptides detected in this lncRNA

>peptide 1 (74 aa)
RLVGGGGGDEEGGAGGLNLRVHVAAAAAVAALAGAAAAAVSSAARHPRGCLGLDGSFDWCWLGASSVLLACWLE*

>peptide 2 (56 aa)
PCGWRWRRRGGWRRRPQPPGTCCSRRSRCRTCRRCRSRSFLRSKTSSRLLGIGWKL*

>peptide 3 (61 aa)
ALWVAVAETRRVAPAASTSGYMLQPPQPLPHLQALPQPQFPPQQDILEVAWDWMEALIGVG*

Sequence

>CNT30661738
CGCCTTGTGGGTGGCGGTGGCGGAGACGAGGAGGGTGGCGCCGGCGGCCTCAACCTCCGGGTACATGTTGCAGCCGCCGCAGCCGTTGCCGCACTTGCAG
GCGCTGCCGCAGCCGCAGTTTCCTCCGCAGCAAGACATCCTCGAGGTTGCTTGGGATTGGATGGAAGCTTTGATTGGTGTTGGCTAGGAGCTTCTTCTGT
GCTTCTTGCTTGCTGGCTTGAGTAACAATGGCAGGCAGCGAGGGCTATTTATAGGCGAGTGAGCATCAAGGAAGGAGGAGAAAGAGAAG