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Detailed information on CNT30660836


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673415Triticum dicoccoidesSetaria viridis6.892110042forward
CNT30291706Triticum dicoccoidesTriticum aestivum41.1558.7899.2251forward
CNT30388347Triticum dicoccoidesTriticum turgidum52.366.1899.37319forward
CNT30249088Triticum dicoccoidesAvena sativa24.7528.0784.77151forward
CNT30133874Triticum dicoccoidesLolium perenne29.6724.0783.98181forward
CNT30682462Triticum dicoccoidesTriticum urartu98.8587.5299603forward
CNT30595554Triticum dicoccoidesOryza meridionalis13.2831.0388.8981forward
CNT30369283Triticum dicoccoidesOryza glumipatula13.2820.8888.8981forward
CNT30148757Triticum dicoccoidesBrachypodium distachyon24.4324.2783.89149forward
CNT30557095Triticum dicoccoidesPanicum hallii10.3320.5992.0663forward

Expression of CNT30660836

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MMYEEREGTYALWVAVAATRRVAPAASTSGYMLQPPQPLPHLQALPQPQLPPQQDIFEVAWDWMEALIGVG*

>peptide 2 (44 aa)
MYRLNHGRFYLGVGLHAWECTCSAHAGRCLHTYKDPRSGSVTWY*

>peptide 3 (51 aa)
MHGSAPALLMLAGAYIHTKTLDQVALHGTRWMDGSIIDMMHARGACMIDDQ*

>peptide 4 (47 aa)
MINDLAAAAGAAAAGAALALGAAAAAILRRHLHPAGTPAPIHPSLDP*

>peptide 5 (64 aa)
MRKEKGRTPCGWRWRRRGGWRRRPRPRGTCCSRRSRCRTCRRCRSRSFLRSKTSSRLLGIGWRP*

Sequence

>CNT30660836
ATGTATAGGTTAAACCACGGGAGATTTTATTTAGGGGTCGGTTTACATGCATGGGAGTGCACCTGCTCTGCTCATGCTGGCAGGTGCTTACATACATACA
AAGACCCTCGATCAGGTAGCGTTACATGGTACTAGATGGATGGATGGATCGATCATAGATATGATGCATGCGCGCGGTGCATGCATGATCGATGATCAAT
GATCTAGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCACTGGGTGCAGCCGCAGCCGCCATCCTCCGCCGCCATCTCCATCCCGCCGGAA
CTCCTGCACCCATCCATCCATCCTTAGACCCATAGCAAGATCAACATATATAGTCATATTACAGCGAGGCGCATGATGTATGAGGAAAGAGAAGGGACGT
ACGCCTTGTGGGTGGCGGTGGCGGCGACGAGGAGGGTGGCGCCGGCGGCCTCGACCTCGGGGTACATGTTGCAGCCGCCGCAGCCGTTGCCGCACTTGCA
GGCGCTGCCGCAGCCGCAGCTTCCTCCGCAGCAAGACATCTTCGAGGTTGCTTGGGATTGGATGGAGGCCTTGATTGGTGTTGGCTAGGAGCTTCCTGTG
TGCTTCTTGC