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Detailed information on CNT30660235


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 9e-13

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Triticum dicoccoidesSetaria viridis80.4566.3598.81757forward
CNT30641383Triticum dicoccoidesNymphaea colorata10030.1295.11941reverse complement
CNT30550219Triticum dicoccoidesIpomoea triloba10021.6797.87941reverse complement
CNT30702366Triticum dicoccoidesQuercus lobata78.2173.997.42736forward
CNT30283003Triticum dicoccoidesChenopodium quinoa83.5382.397.07786forward
CNT30632346Triticum dicoccoidesVigna unguiculata100.1133.6897.35942reverse complement
CNT30505560Triticum dicoccoidesNicotiana attenuata100.1142.6197.24942forward
CNT30162096Triticum dicoccoidesPistacia vera13.2842.09100125forward
CNT3089926Triticum dicoccoidesSolanum tuberosum30.512.9795.82287forward
CNT30306129Triticum dicoccoidesTriticum aestivum10075.5898.41941reverse complement
CNT30221833Triticum dicoccoidesHordeum vulgare70.1448.3597.27660reverse complement
CNT30569655Triticum dicoccoidesActinidia chinensis100.3226.5196.72944reverse complement
CNT30508923Triticum dicoccoidesSolanum lycopersicum31.9990.1298.01301reverse complement
CNT30147396Triticum dicoccoidesMedicago truncatula10031.6397.45941reverse complement
CNT30438197Triticum dicoccoidesAegilops tauschii80.6672.4998.81759reverse complement
CNT30605146Triticum dicoccoidesGossypium raimondii100.1161.6997.13942forward
CNT30216578Triticum dicoccoidesKalanchoe fedtschenkoi10028.2597.56941reverse complement
CNT3067934Triticum dicoccoidesLeersia perrieri23.898.2595.98224forward
CNT30208772Triticum dicoccoidesHelianthus annuus49.4285.9597.2465reverse complement
CNT30718256Triticum dicoccoidesMalus domestica golden27.5284.6488.42259reverse complement
CNT30628241Triticum dicoccoidesDaucus carota10034.8597.98941forward
CNT30682011Triticum dicoccoidesTriticum urartu80.6677.8598.81759reverse complement
CNT30429739Triticum dicoccoidesPapaver somniferum100.1129.2894.27942reverse complement
CNT30644906Triticum dicoccoidesCannabis sativa21.2562.590.5200forward
CNT3056076Triticum dicoccoidesAmborella trichopoda98.7240.3692.47929reverse complement
CNT30320583Triticum dicoccoidesAsparagus officinalis28.3724.34100267reverse complement
CNT30118993Triticum dicoccoidesCitrus clementina29.0177.5694.14273reverse complement
CNT3038324Triticum dicoccoidesCucumis melo100.1149.9597.13942forward
CNT3099709Triticum dicoccoidesOryza rufipogon39.321798.38370reverse complement

Expression of CNT30660235

Peptides detected in this lncRNA

>peptide 1 (41 aa)
VSRRSKPNLRTTSIGEQPNPWDLLQPQDVMSRHRGAKRLRR*

>peptide 2 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNQRLSLPSHTSVTL*

>peptide 3 (38 aa)
MCRFPNQKIGEHPFSQSYGVILSSSFDMVLSTRPSILYL

Sequence

>CNT30660235
TGTCTCACGACGTTCTAAACCCAACTTACGTACCACTTCCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACAT
CGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGG
GACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCAACGCT
TGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCGCCCCAGATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATGATCGGTGCG
GCGGTTAGGCATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTT
TGAAGCTATAGTCAAGGTGCACGGGGTCTTACCGTCTATCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGC
GGGGCAGTCGTTACACCATTAGTGCAGGTTGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT
CCATTCAAAGCTTATCACACTTCTCCTTCTGACCTACCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTT
AATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCAAAGTTACGGGGTCATTTTGTCGAGTTCCT
TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTG