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Detailed information on CNT30660053


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43216|H2B5_WHEAT, E-value = 2e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518188Triticum dicoccoidesJuglans regia42.5332.0183.69282forward
CNT30618877Triticum dicoccoidesSesamum indicum39.8233.5581.44264forward
CNT3072234Triticum dicoccoidesQuercus suber27.929.3781.08185forward
CNT30379403Triticum dicoccoidesManihot esculenta17.6520.8283.76117forward
CNT30630598Triticum dicoccoidesVigna unguiculata39.2246.6883.08260forward
CNT30284074Triticum dicoccoidesTriticum aestivum42.8447.5797.54284forward
CNT30222948Triticum dicoccoidesHordeum vulgare58.5285.4691.24388forward
CNT3086649Triticum dicoccoidesVigna radiata37.8633.6583.67251forward
CNT30171046Triticum dicoccoidesTrifolium pratense17.9533.5284.87119forward
CNT30244799Triticum dicoccoidesAvena sativa41.9338.7297.12278forward
CNT30130711Triticum dicoccoidesLolium perenne42.2341.1895.71280forward
CNT3066775Triticum dicoccoidesLeersia perrieri21.4236.9895.07142forward
CNT30129800Triticum dicoccoidesCorymbia citriodora40.5733.4288.48269forward
CNT30346527Triticum dicoccoidesEragrostis tef26.783.8996.61177forward
CNT30369169Triticum dicoccoidesOryza glumipatula41.3347.8295.99274forward
CNT30570929Triticum dicoccoidesVitis vinifera38.1637.780.63253forward
CNT3052765Triticum dicoccoidesAmborella trichopoda18.2523.8286.78121forward

Expression of CNT30660053

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCLSTLKM*

Sequence

>CNT30660053
TCATCATAAAACTGAAGCACAGCACAATTGAAACAACCACTGGATGATTCATTGATTCAGATAATCCGACTCATTTTACACTGTTTGTATAGGGGATCCT
AAGCCCCTGCGATTGTTGACACACGAAGAAACGGAACCAGACTGACAAGAGCCTCGGCGGGCGGCAGGCAATCTAAGAGGAGGTGAACTTGGTGACGGCC
TTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGT
AGCGCGCCAGCTTGGCCGACTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGG
GTGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTACGTCTCGACGCTCTTCTTGGCCTTCTTCTTCTTCTTGTCGGCGCCGCCGTCCTTGCCGGGC
ACGCGCTTCTCGGCCTTGGGCTTCTTCTCCGTCTCCACCGGCTTCTTCTCCGCGGCGGGCTTCTTCTCGGCCTTGGGCGCCATGACGGTTTCGGCGGAGG
TGGAGAGGACGAGGGATCGGGTTGGGGGCGCGAGGTGGGAGGACTGGAGGATTTGCGCTGGGG