Detailed information on CNT30658798


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673993Triticum dicoccoidesSetaria viridis10054.7497.71306reverse complement
CNT30513357Triticum dicoccoidesJuglans regia99.0245.794.72303forward
CNT30177674Triticum dicoccoidesSecale cereale10015.0798.37306forward
CNT30221081Triticum dicoccoidesHordeum vulgare10015.1198.37306reverse complement
CNT30384952Triticum dicoccoidesTriticum turgidum82.6893.36100253forward
CNT30538116Triticum dicoccoidesBrassica napus64.0516.1796.43196reverse complement
CNT3017925Triticum dicoccoidesZea mays71.2419.1199.54218reverse complement
CNT30150229Triticum dicoccoidesBrachypodium distachyon10041.3599.02306reverse complement
CNT30603109Triticum dicoccoidesGaldieria sulphuraria49.0257.4782.67150forward

Expression of CNT30658798

Peptides detected in this lncRNA

>peptide 1 (52 aa)
RAPPWADFSFCSSAYGVLATVSSCCSPPKGRFLRVTHPFATRNTTSRSTCMC*

>peptide 2 (47 aa)
MPPAFILSQDRTLHEIHSCITYSFLIRRQSRFGIVFPSKDNLYPCASD

>peptide 3 (34 aa)
MRFIVALLIASLFVDKADSELSFLPRITCIHALQI

>peptide 4 (40 aa)
SPSLGGFLLLLLSLRGISNRFQLLFPSQGQVLTRYSPVRH*

Sequence

>CNT30658798
CGAGCCCCTCCTTGGGCGGATTTCTCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTAC
GCGTTACTCACCCGTTCGCCACTAGAAACACCACTTCCCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAGCCAGGATCGAACTCTC
CATGAGATTCATAGTTGCATTACTTATAGCTTCCTTATTCGTAGACAAAGCAGATTCGGAATTGTCTTTCCTTCCAAGGATAACTTGTATCCATGCGCTT
CAGATT