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Detailed information on CNT30658727


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 3e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672021Triticum dicoccoidesSetaria viridis22.5423.3286.54156forward
CNT30520517Triticum dicoccoidesSetaria italica20.8146.7584.03144forward
CNT30288787Triticum dicoccoidesTriticum aestivum37.8680.62100262forward
CNT30221016Triticum dicoccoidesHordeum vulgare21.8226.3598.68151forward
CNT30553080Triticum dicoccoidesOryza glaberrima17.243.2784.03119forward
CNT30436477Triticum dicoccoidesAegilops tauschii20.5246.7183.8142forward
CNT30680806Triticum dicoccoidesTriticum urartu32.3764.5597.77224forward
CNT30721394Triticum dicoccoidesTriticum spelta18.3547.5785.83127forward
CNT30362957Triticum dicoccoidesSorghum bicolor42.3436.9589.42293forward
CNT30596665Triticum dicoccoidesOryza meridionalis20.9530.3395.17145forward
CNT30556764Triticum dicoccoidesPanicum hallii45.6640.4189.56316forward

Expression of CNT30658727

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLFIRDSPHRFFSSTSRYVRTAWVDVVHHAHAPEPVAHVPALRPQHRLVQVVWVVRHQTHLHHADRTP*

Sequence

>CNT30658727
ATAAAGGTCCTTTATTGTTACGTAACTTGTCATTACACATACAAGCACAACACAGCTGGCTCCGTTATTCTGCGGCGTAGGTAGCGAGAGACGCATGCAT
GTTGTTTATCCGGGACAGTCCACATCGTTTCTTCAGTAGTACTAGTAGATACGTACGTACGGCATGGGTAGATGTTGTTCACCATGCGCACGCACCTGAA
CCCGTTGCCCACGTCCCTGCTCTCCGTCCACAGCACCGACTCGTCCAGGTAGTCTGGGTTGTACGGCACCAGACGCACCTGCATCATGCCGATCGAACAC
CCTGACGTTCAGCAAGTTCTGTCATGGTGATTCTTGATACCAATTTATGGGAATACTTACAGGGTGGGACTGGCCGAGGGAGTGCTTGATGGCCTGCCCG
GTGGCCTTGTTCACCATGGCGAAGGCGGGGTAGCCCTCCTCGTCCTTGATGCTGGTGCTCCACCTCATGTCCTTGATCCAGTGCTGGTAGTCGTCCTTGG
GGTTGGCCGGCGCCAGCACCACCTTGCCGTTGCGGACGGACATGGCGTAGTTGGGGTTGGCGCGGCAGTAGATCTTCACCGTGGGCTGCGGCGGCATCGG
CCTCCCGCCGTAGTTGCCGTCGATGTTCACCTGCGACATGCCGTACGGCACCGGCGCCGCGTACCCGGGCGTCGCCATCCCGTACCCGCCGT