Detailed information on CNT30658660


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL3|NLTP3_ORYSJ, E-value = 7e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30386779Triticum dicoccoidesTriticum turgidum100.2797.4690.68730forward
CNT30436289Triticum dicoccoidesAegilops tauschii57.1492.0494.95416forward
CNT30250949Triticum dicoccoidesAvena sativa26.9248.8885.71196forward
CNT30138315Triticum dicoccoidesLolium perenne20.0564.0485.62146forward
CNT30680726Triticum dicoccoidesTriticum urartu22.2550100162forward

Expression of CNT30658660

Peptides detected in this lncRNA

>peptide 1 (45 aa)
QHIILLMIRLVICSICNKGNRWRSNTCRKQQRTHAGSSNSRHRVG*

>peptide 2 (74 aa)
MYVLQSTLVLMGKETETPHLPGMLAALPMLMPDPASFLRQRHAACRSAEVDALAFRVLTPLQHPAEGADACPVA*

>peptide 3 (63 aa)
MHGATADVTSPQVTAPDAISATASAASTANTATSATRAIEDLVLRFACWKPWSWEGAESLISLC

Sequence

>CNT30658660
CTCAACACATTATTTTATTGATGATTCGATTAGTAATCTGCTCGATCTGTAATAAGGGCAACAGATGGAGGTCGAACACATGCAGAAAACAACAGCGAAC
ACATGCAGGGAGCAGCAACAGTAGACACCGAGTCGGCTAGCTAGCCTGGTGTGATGATGATGCTGGCAGATAACTTAGTGAAGGCTGCAAACGCACAGAC
ACAAAAGCTCAACGATTAATCTTACTGTTTATACTTACGGATTAAGGTTTAATAGCCAATGAGTACTTAGAATTATATAATATAATCTTTCAAGTTAGGG
GTGGAGGATGTACGTGTTGCAGTCGACTTTGGTGTTGATGGGGAAAGAGACGGAGACACCGCACTTGCCGGGGATGTTGGCGGCGTTACCCATGCTGATG
CCCGACCCGGCCAGCTTCTTGAGGCAGCGGCACGCCGCCTGCCGGTCGGCCGAGGTGGACGCCTTGGCGTTCAGGGTCCTCACCCCGCTGCAGCACCCCG
CCGAGGGCGCCGACGCTTGCCCCGTCGCGTAGGACATGCACGGCGCGACGGCGGACGTCACGTCGCCGCAGGTCACCGCCCCGGACGCCATCTCCGCCAC
CGCCAGTGCCGCGAGCACGGCGAACACGGCGACCAGTGCCACGCGAGCCATCGAGGATCTAGTGCTTCGGTTTGCTTGCTGGAAACCGTGGAGCTGGGAA
GGAGCTGAGAGCTTGATTAGCTTGTGTG