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Detailed information on CNT30658643


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 1e-44

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Triticum dicoccoidesOryza sativa53.2728.0691.1236forward
CNT30671877Triticum dicoccoidesSetaria viridis42.6694.594.18189forward
CNT30520655Triticum dicoccoidesSetaria italica48.5386.6992.09215forward
CNT30180108Triticum dicoccoidesSecale cereale44.9290.8791.46199forward
CNT30289434Triticum dicoccoidesTriticum aestivum59.1445.2593.89262forward
CNT30386449Triticum dicoccoidesTriticum turgidum74.2766.6100329forward
CNT30554471Triticum dicoccoidesOryza glaberrima53.2742.8391.1236forward
CNT30436341Triticum dicoccoidesAegilops tauschii55.0880.2691.39244forward
CNT30251924Triticum dicoccoidesAvena sativa53.0543.293.19235forward
CNT30444735Triticum dicoccoidesSaccharum spontaneum48.7637.8392.59216forward
CNT30680880Triticum dicoccoidesTriticum urartu10085.6999.77443forward
CNT30721558Triticum dicoccoidesTriticum spelta48.7696.4387.04216forward
CNT30341886Triticum dicoccoidesEragrostis tef44.9273.4390.45199forward
CNT30361377Triticum dicoccoidesSorghum bicolor48.7619.1887.96216forward
CNT30596661Triticum dicoccoidesOryza meridionalis48.5360.0693.02215forward
CNT30370660Triticum dicoccoidesOryza glumipatula53.2741.1191.1236forward
CNT30104991Triticum dicoccoidesOryza longistaminata48.7691.1493.52216forward
CNT30148227Triticum dicoccoidesBrachypodium distachyon38.1567.0686.39169forward
CNT30102585Triticum dicoccoidesOryza rufipogon49.8962.7892.76221forward
CNT30577143Triticum dicoccoidesOryza barthii53.2746.5591.1236forward
CNT30496422Triticum dicoccoidesDigitaria exilis51.4736.9585.96228forward
CNT30117165Triticum dicoccoidesOryza nivara49.4448.8891.78219forward
CNT30593977Triticum dicoccoidesEragrostis curvula48.7697.391.67216forward
CNT30604388Triticum dicoccoidesOryza punctata35.2146.9992.31156forward
CNT30556620Triticum dicoccoidesPanicum hallii48.7621.9590.28216forward
CNT30551356Triticum dicoccoidesOryza brachyantha35.4445.3892.36157forward

Expression of CNT30658643

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRMQRKPLPMSLLSVHSTDASSYAGLNGTSF

>peptide 2 (44 aa)
MLSIRDGPHDIVSSVDTYVRMCGYLDLPAYVHEPCMARAGWLAQ*

>peptide 3 (86 aa)
MHGARWLAGSVVRLELPALVVALAPLPEHDLGAVAHAAVVLVAVEGVEVEAGVVDHADAAEALAHVLALRPQHRRVLVRRVERHQLH

Sequence

>CNT30658643
TTATTGTTACGTAACTTGTCATTACACACACAAGCACAACAGCTCCGTTATTCTGCGGGGTAGGTAGCGAGAGACGCATGCATGTTGTCTATCCGGGACG
GTCCACATGACATCGTTTCTTCAGTAGATACGTACGTACGCATGTGTGGATATCTCGATCTCCCCGCGTACGTGCACGAGCCATGCATGGCGCGCGCTGG
CTGGCTGGCTCAGTAGTACGGCTGGAGCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGCGCACGCCGCCGTGG
TACTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGCGGGTGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCCATGTCCTTGCTCTCCGTCCACAGCA
CCGACGCGTCCTCGTACGCCGGGTTGAACGGCACCAGCTTCAC