| Target | Query species | Target species | Query coverage (%) | Target coverage (%) | Identity | Alignment length (nt) | Orientation |
| CNT30639595 | Selaginella moellendorffii | Nymphaea colorata | 26.07 | 19.28 | 90.11 | 91 | forward |
| CNT30628366 | Selaginella moellendorffii | Vigna unguiculata | 38.4 | 9.38 | 85.82 | 134 | forward |
| CNT3096327 | Selaginella moellendorffii | Solanum tuberosum | 23.21 | 10.19 | 88.89 | 81 | forward |
| CNT30221157 | Selaginella moellendorffii | Hordeum vulgare | 16.33 | 27.14 | 89.47 | 57 | forward |
| CNT3084173 | Selaginella moellendorffii | Vigna radiata | 23.21 | 11.64 | 87.65 | 81 | forward |
| CNT30144739 | Selaginella moellendorffii | Medicago truncatula | 25.5 | 19.18 | 85.39 | 89 | forward |
| CNT30611972 | Selaginella moellendorffii | Arabis alpina | 25.5 | 37.39 | 92.13 | 89 | forward |
| CNT30365573 | Selaginella moellendorffii | Sorghum bicolor | 40.11 | 39.66 | 85 | 140 | forward |
| CNT30354795 | Selaginella moellendorffii | Lactuca sativa | 42.69 | 17.7 | 83.22 | 149 | forward |
| CNT30570586 | Selaginella moellendorffii | Vitis vinifera | 25.5 | 12.9 | 87.64 | 89 | forward |
| CNT30329937 | Selaginella moellendorffii | Dioscorea rotundata | 26.65 | 8.98 | 88.17 | 93 | forward |
| CNT30103950 | Selaginella moellendorffii | Oryza rufipogon | 22.64 | 23.1 | 89.87 | 79 | forward |
>CNT3065844
CTCTTGGTGACTGAATCGTTGACATTGATAGCCGGGAAGAGCAGCGATCCATTCGACTGCATCTGGTAGAGCCTCTTGACACCAGTGGTGGTCTCCTCAG
AAACACCAACAAGCCTCTCCATCATCTTGTGGTACCTCTTGGGATCGACCTGGAGGCCCTCCTTGAGGATCCCAAGAACGATCTGGAACTCCTGGTTAGT
GGTGGAGCTCGGATCCGGCAGCGTTCCATTCTTCTCAAACTCCTTCTCGGCCTTGACACCCTCGTGGATGAGCAAAGTGGCATCGCCACCATCGGCCGTG
AGAGTCTCGATCAAAACAGCCGTTTGAATCGTCATGTGGAGCGAGCCAG