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Detailed information on CNT30658347


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 5e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672503Triticum dicoccoidesSetaria viridis61.8536.4282.93334forward
CNT30521106Triticum dicoccoidesSetaria italica63.8947.5982.61345forward
CNT30181095Triticum dicoccoidesSecale cereale98.8934.6396.44534forward
CNT30290030Triticum dicoccoidesTriticum aestivum91.1197.6298.37492forward
CNT30555612Triticum dicoccoidesOryza glaberrima70.7436.5687.43382forward
CNT30248284Triticum dicoccoidesAvena sativa70.935191.91383forward
CNT30136970Triticum dicoccoidesLolium perenne71.4860.4187.82386forward
CNT30681645Triticum dicoccoidesTriticum urartu83.3330.7696.67450forward
CNT30150944Triticum dicoccoidesBrachypodium distachyon68.1555.0989.13368forward
CNT30104669Triticum dicoccoidesOryza rufipogon69.0744.9986.6373forward
CNT30556975Triticum dicoccoidesPanicum hallii62.2242.0584.23336forward
CNT30551876Triticum dicoccoidesOryza brachyantha62.5939.386.98338forward

Expression of CNT30658347

Peptides detected in this lncRNA

>peptide 1 (33 aa)
SYRTKNMLWSESRVLDKSEVHKRQSYIGHCFNS*

Sequence

>CNT30658347
ATCATACCGAACGAAAAATATGCTCTGGTCGGAAAGCAGAGTCCTGGACAAAAGTGAAGTTCACAAAAGACAATCATACATAGGCCATTGTTTCAACTCG
TAGTTTAGGCCTTGCCAGACTCCTCGCAACCCGGTGGCCTGAATGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACGCGGAC
ATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGCGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTAT
CGGCCGTCGTAGTACCCGGGGGAGCTGTTGTGCTCACGAAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGT
CGACCTGCTTCAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAATAGAAT
GCGCAGATGCTCAATACTTGGTGCTAAGTCAATTAACTGT