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Detailed information on CNT30658325


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 4e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221752Triticum dicoccoidesHordeum vulgare82.1388.6493.93593forward
CNT30555725Triticum dicoccoidesOryza glaberrima42.841.4886.73309forward
CNT30436767Triticum dicoccoidesAegilops tauschii83.180.4397.5600forward
CNT30578612Triticum dicoccoidesOryza barthii42.827.3286.73309forward
CNT30118025Triticum dicoccoidesOryza nivara41.9726.1986.14303forward

Expression of CNT30658325

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLHNLCSYKHRSYRTKNMLWSESRVLDKSEVHKRQSYIGHCFNS*

>peptide 2 (33 aa)
PNKESFPRINSRTMVRLLYIINITLVLYMCSRC*

>peptide 3 (30 aa)
MHAPQPMFVQTQIIPNEKYALVGKQSPGQK*

Sequence

>CNT30658325
TGCCAAATAAAGAAAGTTTTCCGAGAATTAACAGCAGGACAATGGTCCGCTTGTTGTATATAATAAATATCACACTGGTGTTGTATATGTGTAGCCGGTG
CTAGAATTTACATATGCATGCTCCACAACCTATGTTCGTACAAACACAGATCATACCGAACGAAAAATATGCTCTGGTCGGAAAGCAGAGTCCTGGACAA
AAGTGAAGTTCACAAAAGACAATCATACATAGGCCATTGTTTCAACTCGTAGTTTAGGCCTTGCCAGACTCCTCGCAACCCGGTGGCCTGAATGCGATGA
AGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTG
CGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGGCCGTCGTAGTACCCGGGGGAGCTGTTGTGCTCACGAAAGACGAAGCCA
ACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGTCGACCTGCTTCAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGG
CAGGGCACCCACTTGGAGCGGATCAGGTAGTCGACCTGCTTAAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCAAACTTCTTGATGC
CCTCAATCGGCCACACCTGAAT