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Detailed information on CNT30657980


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Triticum dicoccoidesSetaria viridis90.9391.3897.57371forward
CNT30549212Triticum dicoccoidesIpomoea triloba98.5313.3294.53402reverse complement
CNT30513456Triticum dicoccoidesJuglans regia98.5312.6795.27402reverse complement
CNT30272552Triticum dicoccoidesChenopodium quinoa87.7528.4695.53358reverse complement
CNT30730494Triticum dicoccoidesCorchorus capsularis98.0445.4595.25400reverse complement
CNT30630109Triticum dicoccoidesVigna unguiculata98.5312.7594.53402reverse complement
CNT30196906Triticum dicoccoidesPisum sativum80.6443.4695.74329reverse complement
CNT30491951Triticum dicoccoidesOlea europaea22.311.8587.9191forward
CNT30220355Triticum dicoccoidesHordeum vulgare70.5996.3298.26288reverse complement
CNT30384830Triticum dicoccoidesTriticum turgidum98.2868.3198.25401reverse complement
CNT30569398Triticum dicoccoidesActinidia chinensis98.5320.5795.02402reverse complement
CNT30552690Triticum dicoccoidesOryza glaberrima98.2826.1997.51401reverse complement
CNT30442196Triticum dicoccoidesAegilops tauschii98.2847.2998.75401forward
CNT30207763Triticum dicoccoidesHelianthus annuus98.5343.3795.02402reverse complement
CNT30688674Triticum dicoccoidesTriticum urartu98.2830.4599401reverse complement
CNT30347837Triticum dicoccoidesEragrostis tef98.2852.0198.5401forward
CNT30620564Triticum dicoccoidesCajanus cajan98.537.7794.78402forward
CNT30354697Triticum dicoccoidesLactuca sativa57.633.2995.74235reverse complement
CNT30410880Triticum dicoccoidesPapaver somniferum98.5344.3795.02402reverse complement
CNT30642274Triticum dicoccoidesCannabis sativa87.9943.9490.81359forward
CNT3036965Triticum dicoccoidesCucumis melo98.5355.2295.27402reverse complement
CNT30104374Triticum dicoccoidesOryza rufipogon98.2830.297.51401forward
CNT30604015Triticum dicoccoidesOryza punctata98.2883.0293.52401forward

Expression of CNT30657980

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLSAVILSALGYPAFTVGTITGTPEVRPSWSSRTRERSSQCSNTHTRYGPNCLTTF*

>peptide 2 (42 aa)
CLGCDTGGSREVGGESTHLGVGLLLICFQQLSSPHLATQRLP*

>peptide 3 (59 aa)
VSAVIPEALGKSEERALILGWAYYLYAFSSYPLRTWLPSVYRRHDNWYTRGASFLVLSY*

>peptide 4 (58 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQVAKSRHRGAKPSRRCGLLGKISLLSLE*

Sequence

>CNT30657980
CTGTCTCGGCTGTGATACCGGAGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCT
CCGCACTTGGCTACCCAGCGTTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCTGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATG
CTCTAACACCCACACCAGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA
CCTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTATTATCCCTAGAGTAACTT
TATCCGTT