« Back to Triticum dicoccoides search


Detailed information on CNT30657592


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 2e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287807Triticum dicoccoidesTriticum aestivum74.8656.7899.85649forward
CNT30221104Triticum dicoccoidesHordeum vulgare75.3253.5292.34653forward
CNT30386026Triticum dicoccoidesTriticum turgidum74.5150.8395.82646forward

Expression of CNT30657592

Peptides detected in this lncRNA

>peptide 1 (37 aa)
SIAVPNKESFPRINSRTMVRLLYIINITLVLYMCSRC*

>peptide 2 (38 aa)
MLHNLCSYKHRSYRTKNMLWSESRVLDKSEVLYMCSRF*

>peptide 3 (30 aa)
MHAPQPMFVQTQIIPNEKYALVGKQSPGQK*

>peptide 4 (30 aa)
MKNMLWSSSRVVDKSDVHKRPSYIGHCFNS*

Sequence

>CNT30657592
ATCCATTGCAGTGCCAAATAAAGAAAGTTTTCCGAGAATTAACAGCAGGACAATGGTCCGCTTGTTGTATATAATAAATATCACACTGGTGTTGTATATG
TGTAGCCGGTGCTAGAATTTACATATGCATGCTCCACAACCTATGTTCGTACAAACACAGATCATACCGAACGAAAAATATGCTCTGGTCGGAAAGCAGA
GTCCTGGACAAAAGTGAAGTTTTGTATATGTGTAGCCGGTTCTAGAATTTACATATGCATGCTCGAGAACCTATGTTCGTACATACATACACAGACCATA
TAGAATGAAAAATATGCTCTGGTCGTCCAGCAGAGTCGTGGACAAAAGTGACGTTCACAAAAGACCTTCATACATAGGCCATTGTTTCAACTCGTAGTTT
AGGCCTTGCCAGACTCCTCGCAACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACGCGGACATAGGC
GTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGTGTGGCGTCGGTTGTCGAAGCCGATGACGCGGACATAGGCGTCAGGGTACTCCTT
CTTGACCTCCTCCACCTCGTTGAGCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGACCGTCGTAGTACCCGGGG
GAGCTGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGTCGACCTGCTTAAGGAGGGCCT
CCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCAAACTTCTTGATGCCCTCAATCGGCCACACCTG