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Detailed information on CNT30657199


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30177230Triticum dicoccoidesSecale cereale68.11101.187.25549forward
CNT30435316Triticum dicoccoidesAegilops tauschii39.0817.9993.65315forward
CNT3079106Triticum dicoccoidesBrassica juncea8.1924.7298.4866reverse complement
CNT30214058Triticum dicoccoidesHelianthus annuus9.4328.7998.6876forward
CNT30107453Triticum dicoccoidesOryza longistaminata9.1827.9297.374reverse complement
CNT3035140Triticum dicoccoidesCucumis melo9.5531.397.477reverse complement

Expression of CNT30657199

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MALHQARLAQLVESKALNLVVVGSSPTVGDSFFIFSLENYYHSA*

>peptide 2 (52 aa)
SPPRSNCAQARIGYDGLHRTPLGVPPLSMCSAVACLPSTIGINPTAARVLLP*

>peptide 3 (53 aa)
MEDPSNSIWVGTASARHWRNHPTTMPDGSAAESPHPRRDLVNPGYGFHGRRFE*

Sequence

>CNT30657199
CTCCCCTCCACGATCAAATTGTGCCCAAGCTAGGATAGGATACGATGGTTTGCATCGCACTCCTTTGGGCGTTCCTCCTCTTTCCATGTGCAGCGCTGTC
GCGTGCCTCCCCTCCACGATCGGAATAAACCCGACGGCAGCGCGGGTGCTACTCCCATAGGGCTTGTCCAGCAAGCGTGGGCTCGAGCCTGGTGCTCTGT
CCCTCCCAGCCTCTCCGGCAAGGTAAAGCCTCCTCTCCCGCCCCGTCCGCGGCACCTCAATTGGCAAGACTTGGAGCCCGGCGGCCGCGGACAGGCAAAA
TCTTGGCATAGCGCGTACGGAGGATCGGAGCTTGCTTGGCGTCGTCATGGAGGATCCATCCAACTCGATCTGGGTAGGAACTGCCAGTGCCAGACATTGG
AGGAACCATCCAACCACCATGCCCGATGGATCCGCAGCAGAAAGTCCGCATCCCCGAAGAGATCTCGTGAATCCGGGGTATGGTTTTCATGGAAGACGAT
TCGAGTAAGGTAGGGATTGTCGCATCTAACTAAGTGGCTGAACTGAAATGGCTCTACATCAAGCCCGTCTAGCTCAGTTGGTAGAGAGCAAGGCTCTTAA
CCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGATTCTTTTTTCATTTTTTCTTTGGAAAACTACTATCATTCAGCCTGAAGTTTCTGATTCTGACAG
AAACGAAGCTCCTTTCCAGAGCAAACATCACTGCTCATCCCACCATCTCAACCATGGTGAACGATGTCAGGAGCTACCTGACCCGAGATCGAGAGATCTT
GTGTGG