« Back to Triticum dicoccoides search


Detailed information on CNT30656987


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RU61|ATPH_ATRBE, E-value = 6e-19

BLAST vs NONCODE:
NONORUT001152, E-value = 9e-75

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678068Triticum dicoccoidesSetaria viridis25.0220.3895.98323forward
CNT30268703Triticum dicoccoidesChenopodium quinoa19.2122.1691.53248forward
CNT30506790Triticum dicoccoidesNicotiana attenuata12.2425.9991.14158reverse complement
CNT30553466Triticum dicoccoidesOryza glaberrima10.3825.6798.51134forward
CNT30440667Triticum dicoccoidesAegilops tauschii21.6953.7497.5280forward
CNT30103672Triticum dicoccoidesOryza rufipogon15.2622.5782.23197forward

Expression of CNT30656987

Peptides detected in this lncRNA

>peptide 1 (81 aa)
KEWVTFFICSPLIDRTNKEQSFSITYFARPFLIGFFNANRFNLVISFRLSLTSSLTGERLPLLKCSVPKIPKIKGKNFPLS*

Sequence

>CNT30656987
GAAAGAATGGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGAACAAAGAACAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATC
GGTTTTTTTAATGCAAATAGATTCAATCTAGTAATTTCTTTTAGATTAAGTCTTACGTCTTCTTTGACCGGTGAAAGACTTCCTTTGTTGAAATGTTCTG
TTCCCAAAATTCCTAAAATAAAAGGAAAAAACTTTCCACTTTCCTAAACTAAGGACGGGAAATAAGAAGGTGAGCATATCTTCTAAATTAATAATACTCA
ACTCAGCCCTTCCTAGAATGGGGTATTATCTGTCCCGATAAATAGATAATTCCAGGAGTAATAAATAGGAGTAAATTAAATAAAGTATTGATATAATTGG
AATTGCGGAAGCAAATACCAATTTACTAAAAAAAGAAAAAAGTATCTAATCGAAATCGAAAGAATTTTTTTTTAAGATTAAACAAAAGGGTTCGCAAATA
AACGCGCTAGTGCCACAACTAGTCCATAAATTGTTAAAGCTTCCATAAAAGCTAGACTAAGCAATAAAGTACCTCGTATTTTACCTTCTGCTTCTGGCTG
TCTCGCAATACCTTCTACAGCTTGTCCTGCAGCAGTACCTTGACCAACTCCAGGTCCAATAGAAGCAAGCCCTACGGCCAATCCAGCAGCAATAACAGAA
GCAGCAGCAATTAGTGGATTCATGGTGAGTAGTTCCTCGTGTCAAAAAAAAGAAATGGTTAAGGATACAATCAACCAATAAATTCTTACTTCTAAGCTCT
ATTGGGGAGAAGTAAAGTAACTAAAAAGTACAAATTGAAATCAAATTGAAATGATAATGTGAATTGTCCGAACTACATAGAATGGAATTCCATATCCATA
TATCGGATTAGATAATGAATCTAACCTAGGAATATATAATATAATATCCTATATATACATTTGTTTCTTCTATTTTGTTTGCATATTTTCTCATTTTCTA
TTGAATCGGATTCTAAAATCATTGCTTAAAGTGGAAACCCGCATAAAAGAGGACTCCACTTATAGACATTAAGGATATTATAGTATAGATCTAGCCTGAC
TCCACCCTCCTTAATGCATATATACTTTGAAAATTCCATAATATAGTCTATTCTATTCTCTCTCCTACAACTCTAGGCTATATATTCATACGCATTTCTA
ACTATTTTTTTGCAACCAAGCAGATTATCCGGAACCATGCATGAATTGAGATAAGCTGCAAAAAAAAAAAATACTATTTCCAAAAATAGTC