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Detailed information on CNT30656187


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG86|RS271_HORVU, E-value = 5e-74

BLAST vs NONCODE:
NONSTUT000620, E-value = 6e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693384Triticum dicoccoidesOryza sativa31.5942.495.28212forward
CNT30523172Triticum dicoccoidesSetaria italica31.5933.4992.45212forward
CNT30178164Triticum dicoccoidesSecale cereale60.3659.9197.28405forward
CNT30285916Triticum dicoccoidesTriticum aestivum61.2567.2796.59411forward
CNT30553804Triticum dicoccoidesOryza glaberrima31.5935.1695.28212forward
CNT30435581Triticum dicoccoidesAegilops tauschii67.3690.2298.67452forward
CNT30142281Triticum dicoccoidesLolium perenne58.4250.9894.13392forward
CNT30719929Triticum dicoccoidesTriticum spelta61.2570.7496.59411forward

Expression of CNT30656187

Peptides detected in this lncRNA

>peptide 1 (47 aa)
NRLKAFRLIAYGHQNLSTHRVTAVGDEIFRKHKTQGFSLNDKRDTSK*

>peptide 2 (71 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSSVMVLPVRVFTKICILAAVGGRLRALRRRRRRRGRVWVGVRSG

Sequence

>CNT30656187
GAATAGATTAAAAGCATTTAGACTGATAGCATACGGACACCAAAATTTAAGCACGCATCGCGTTACAGCAGTAGGCGATGAAATATTCAGGAAACATAAG
ACTCAAGGTTTCAGTTTAAACGACAAACGGGACACATCTAAGTGAGTTCGACTCTCGATAGGTAGGTAAAAGAGCAGAGCAATCGCAAGCCACCTCTAAG
CCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCCGCGCCGCAGTCGGCGTTGGGACA
CTCCTTCCTGAGCCTGGTCACCTTGCCGGTGGCGTCGTCGACCTTGTAGAACTGGAGGACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTTTGCTTCTTG
GGCTTGGTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCT
TGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGGCGGCGGTGGG
AGGTCGCCTCCGCGCGCTGCGGCGGCGCCGGCGGCGGCGGGGTAGGGTTTGGGTTGGGGTGCGGAGTGGAG