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Detailed information on CNT30656050


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178523Triticum dicoccoidesSecale cereale34.237.4390.48210forward
CNT30435258Triticum dicoccoidesAegilops tauschii45.7798.9497.86281forward
CNT30130278Triticum dicoccoidesLolium perenne45.9332.1692.2282forward
CNT3010986Triticum dicoccoidesZea mays11.7322.2987.572forward
CNT30679870Triticum dicoccoidesTriticum urartu10085.499.84614forward
CNT30720193Triticum dicoccoidesTriticum spelta45.9351.6597.87282forward
CNT30338878Triticum dicoccoidesEragrostis tef25.0819.7485.06154forward
CNT30368187Triticum dicoccoidesSorghum bicolor11.2428.1688.4169forward
CNT30582663Triticum dicoccoidesEchinochloa crusgalli11.2425.1888.4169forward

Expression of CNT30656050

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MPCQLSHAVLLSIDGVRAVELVLGSTCGWSGRRRRRRAGRRACGRRWSCRPGPARRPAGRRRATPLRSSCTCVYRGRVLVLELR

>peptide 2 (37 aa)
MELPARPRTATGWTATSDAIAIELYVRIPWACPGSGAA

>peptide 3 (69 aa)
MVCVLSNSCWVVPAGGAGDGGGGGPDGELAAGDGAAGQAPHGDRLDGDERRHCDRAVRAYTVGVSWFWSC

Sequence

>CNT30656050
ATAGGGGGGAATCCATCAGATCCATGGTACACAAGCACGAGGCGAGAGGAGGAAGAAGGCCTTGATTGCAGATCTACTTAGATCTTGCCACGTGGCCCCG
GGGTGGGGGGCAGCTGGGGCCCCTTCTTGATGGGGAGCAGGTCGGGGGAGGCGGTGGCGCTGACGTAGGCGAGCAGGGAGCCGCCGCCGAGCAGCAGGAC
CTTGAGCAGCAGCCCTCGCTTGGTGAAGGGCGCGGCGAAGGTGTTGAAGAACTTGCTCTGCAGGCCGTTGTAGGGCGACGCCGCGTCGCTGCCGTACAGG
TCGAAGTAGACGCTCTTCTCCCCGTACTTGGCCACCACCGCCGCCCCGCGAGCCCTGCGTTCATGCCATGTCAGTTGAGCCACGCGGTGTTGCTCTCGAT
CGATGGTGTGCGTGCTGTCGAACTCGTGTTGGGTAGTACCTGCGGGTGGAGCGGGAGACGGCGGCGGAGGCGGGCCGGACGGCGAGCTTGCGGCCGGAGA
TGGAGCTGCCGGCCAGGCCCCGCACGGCGACCGGCTGGACGGCGACGAGCGACGCCATTGCGATCGAGCTGTACGTGCGTATACCGTGGGCGTGTCCTGG
TTCTGGAGCTGCGG