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Detailed information on CNT30655558


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690383Triticum dicoccoidesOryza sativa22.3712.6989.4185forward
CNT30672671Triticum dicoccoidesSetaria viridis23.1621.7392.0588forward
CNT30520803Triticum dicoccoidesSetaria italica24.7421.2294.6894forward
CNT30286278Triticum dicoccoidesTriticum aestivum71.0592.4794.44270forward
CNT30225874Triticum dicoccoidesHordeum vulgare24.742.497.8794reverse complement
CNT30383425Triticum dicoccoidesTriticum turgidum10069.3495.79380forward
CNT30552437Triticum dicoccoidesOryza glaberrima22.3720.1489.4185forward
CNT30434913Triticum dicoccoidesAegilops tauschii48.4224.692.39184reverse complement
CNT3015104Triticum dicoccoidesZea mays23.6827.2791.1190forward
CNT30678966Triticum dicoccoidesTriticum urartu87.1164.5297.89331forward
CNT30719808Triticum dicoccoidesTriticum spelta10089.2100380forward
CNT30595633Triticum dicoccoidesOryza meridionalis22.3726.1589.4185forward
CNT30369401Triticum dicoccoidesOryza glumipatula22.3719.2789.4185forward
CNT30148777Triticum dicoccoidesBrachypodium distachyon22.379.5497.6585forward
CNT3099956Triticum dicoccoidesOryza rufipogon22.377.9389.4185forward
CNT30574749Triticum dicoccoidesOryza barthii22.3722.4989.4185forward
CNT30115687Triticum dicoccoidesOryza nivara22.3719.1489.4185forward

Expression of CNT30655558

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MTVLFYLARARAHAAASGTDTLGGGDDDDDCLLLLLILVLASAGRPPGRRLSCSCSRSSRTRCRTCSRRRTRSCRRSKTSSLAVGGGEGRKLRTERML*

>peptide 2 (79 aa)
MRRLVVLIRWVVVMMMMIACFSSSSSCSPLPAGLLGAGSVAAAAGAAARGAALAAGAAPAVAAAARHPPWLWVVAREGS*

Sequence

>CNT30655558
TCAAAGTTGAGGCGCTATATATTCACTAGAAGTGGAGGCATGAGGAGGGACTAAGGAACACATGACGGTTTTATTTTATTTAGCGCGCGCGCGAGCGCAT
GCGGCGGCTAGTGGTACTGATACGCTGGGTGGTGGTGATGATGATGATGATTGCTTGCTTCTCCTCCTCATCCTCGTGCTCGCCTCTGCCGGCCGGCCTC
CTGGGCGCCGGCTCAGTTGCAGCTGCAGCAGGAGCAGCCGCACGCGGTGCCGCACTTGCAGCCGGCGCCGCACCCGCAGTTGCCGCCGCAGCAAGACATC
CTCCTTGGCTGTGGGTGGTGGCGAGGGAAGGAAGCTAAGGACTGAGAGGATGCTGTGAGGAGTGAGGAGGCTGGTGTGCT