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Detailed information on CNT30655496


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FK62|SAU24_ARATH, E-value = 2e-26

BLAST vs NONCODE:
NONVVIT002220, E-value = 1e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019742Rosa chinensisCitrullus lanatus42.716.4187.8123forward
CNT30729168Rosa chinensisCorchorus capsularis42.018.4981.82121forward
CNT3071844Rosa chinensisQuercus suber35.4217.2683.33102forward
CNT30381249Rosa chinensisManihot esculenta38.1933.0388.18110forward
CNT30526628Rosa chinensisPhaseolus vulgaris33.6833.2289.6997forward
CNT30198235Rosa chinensisPisum sativum41.3213.7186.55119forward
CNT30159319Rosa chinensisPistacia vera36.4641.3483.81105forward
CNT3090059Rosa chinensisSolanum tuberosum45.8317.3985.61132forward
CNT3087148Rosa chinensisVigna radiata38.8918.9289.29112forward
CNT30508399Rosa chinensisSolanum lycopersicum43.458.9684125forward
CNT30171855Rosa chinensisTrifolium pratense44.110.7486.61127forward
CNT30144937Rosa chinensisMedicago truncatula35.7624.8284.47103forward
CNT30411826Rosa chinensisPapaver somniferum20.835.9786.6760forward
CNT30570130Rosa chinensisVitis vinifera40.6237.8684.62117forward
CNT3028532Rosa chinensisTheobroma cacao42.3612.0282.79122forward
CNT3035773Rosa chinensisCucumis melo25.695.9386.4974forward
CNT30174684Rosa chinensisVigna angularis38.8914.8587.5112forward
CNT3051199Rosa chinensisCucumis sativus44.4432.4188.28128forward

Expression of CNT30655496

Peptides detected in this lncRNA

>peptide 1 (77 aa)
FLEDKKILHGVQNLVSRTSDSSCLREFMQCRLSSVLDSHTKAESDIKEGILTARNCDTTHWMMVSEFFFSLTQQILK*

>peptide 2 (31 aa)
FWRTRKFYMGFKIWCQELQTVVVLESSCNVV*

Sequence

>CNT30655496
TTTTCTGGAGGACAAGAAAATTTTACATGGGGTTCAAAATTTGGTGTCAAGAACTTCAGACAGTAGTTGTCTTAGAGAGTTCATGCAATGTCGTTTGAGT
AGTGTTCTTGACTCACACACCAAGGCGGAAAGTGACATCAAGGAAGGTATCTTGACTGCAAGGAATTGTGATACCACCCATTGGATGATGGTATCCGAAT
TCTTCTTCAGCTTGACTCAGCAAATCCTGAAATGAAGGTTGGTTCAAGTATGATATTGGAATCACAAATCGCTTCTTCTGGCTCTCTC