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Detailed information on CNT30655407


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 9e-37

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Rosa chinensisOryza sativa14.3910094.8481forward
CNT30670969Rosa chinensisSetaria viridis30.4289.1398.031017reverse complement
CNT30524649Rosa chinensisSetaria italica35.7836.2997.911196forward
CNT30641383Rosa chinensisNymphaea colorata40.9543.8294.521369forward
CNT30550219Rosa chinensisIpomoea triloba82.863.7597.982768forward
CNT30702366Rosa chinensisQuercus lobata29.7910098.9996reverse complement
CNT30378673Rosa chinensisArabidopsis thaliana21.1556.798.44707reverse complement
CNT30619000Rosa chinensisSesamum indicum58.4863.9996.061955forward
CNT30283003Rosa chinensisChenopodium quinoa27.5596.4497.5921reverse complement
CNT30730372Rosa chinensisCorchorus capsularis41.3171.3796.451381forward
CNT30632346Rosa chinensisVigna unguiculata40.6848.6298.91360forward
CNT30490117Rosa chinensisOlea europaea36.5210095.821221forward
CNT30506406Rosa chinensisNicotiana attenuata73.9596.697.532472reverse complement
CNT30712870Rosa chinensisGlycine max24.9850.2496.77835forward
CNT30157603Rosa chinensisPistacia vera29.14102.191.48974forward
CNT30185187Rosa chinensisSecale cereale41.8539.5597.211399forward
CNT30299053Rosa chinensisTriticum aestivum41.8539.0596.851399forward
CNT30221907Rosa chinensisHordeum vulgare35.99100.1793.851203forward
CNT30394721Rosa chinensisTriticum turgidum41.8538.1997.141399forward
CNT30569655Rosa chinensisActinidia chinensis41.7339.1798.281395forward
CNT30543268Rosa chinensisBrassica napus36.3452.9495.971215forward
CNT30554477Rosa chinensisOryza glaberrima11.5853.5396.9387reverse complement
CNT30147396Rosa chinensisMedicago truncatula41.0746.1598.761373forward
CNT30438197Rosa chinensisAegilops tauschii30.4897.3397.841019forward
CNT30242786Rosa chinensisAvena sativa17.6568.1393.56590forward
CNT30670388Rosa chinensisTriticum dicoccoides37.945.1994.161267forward
CNT30140161Rosa chinensisLolium perenne41.8541.197.571399forward
CNT3017954Rosa chinensisZea mays42.0337.0896.871405forward
CNT30605068Rosa chinensisGossypium raimondii33.9274.2198.851134reverse complement
CNT30216563Rosa chinensisKalanchoe fedtschenkoi40.9535.298.831369forward
CNT30207637Rosa chinensisHelianthus annuus41.2270.4596.521378forward
CNT30628241Rosa chinensisDaucus carota39.0148.399.081304reverse complement
CNT30682011Rosa chinensisTriticum urartu29.2100.197.64976forward
CNT30721631Rosa chinensisTriticum spelta41.8540.2897.071399forward
CNT30346087Rosa chinensisEragrostis tef24.1177.9597.64806forward
CNT30359520Rosa chinensisLactuca sativa41.1954.0897.751377reverse complement
CNT30429739Rosa chinensisPapaver somniferum38.8340.3594.761298forward
CNT30571858Rosa chinensisVitis vinifera45.2343.6297.491512reverse complement
CNT3057903Rosa chinensisAmborella trichopoda34.7348.4693.281161reverse complement
CNT30108930Rosa chinensisOryza longistaminata34.2848.9795.111146forward
CNT3038324Rosa chinensisCucumis melo43.2576.6795.781446reverse complement
CNT30499372Rosa chinensisDigitaria exilis39.2838.6397.641313forward
CNT30603680Rosa chinensisOryza punctata41.8535.4497.51399forward
CNT30557400Rosa chinensisPanicum hallii19.4147.397.23649forward
CNT30113381Rosa chinensisFicus carica13.3410095.29446reverse complement

Expression of CNT30655407

Peptides detected in this lncRNA

>peptide 1 (64 aa)
TRSKRMHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRGKSALFGLFKLSELKHLSS*

>peptide 2 (69 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMYRGSSDSPKRRDLEFFSSVSSGTFCQSGKVFGDNTWRYQK*

>peptide 3 (30 aa)
KIEKNALDGCPGIEKEGRFQRRKAMGRYRL*

>peptide 4 (45 aa)
MSNDKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 5 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

Sequence

>CNT30655407
ACAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCAT
GGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCAAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAA
GGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGGTTGGGGGTTTGAAGAAAAACAAACACGAAGCCTCCTACGGCAAAGTGTTCACTTC
TTTTTCGCCAGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCCAATCTTCTTGATTCTCAAGTCGACGGCACAGTGAACTGTAA
TTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTC
TGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACC
CTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCTTACTTTATATTATTAAAGCGCACTCACTCTAACGG
CGTACCTTTTGCATGATGGGTCAGCGAGAAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTAT
TTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGAC
TTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGC
ACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAA
GATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGT
GGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTATCGGGGCTCAAGTGATTCACCGAAGCG
ACGAGACCTTGAATTTTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGC
TGACATGAGTAACGATAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGG
AACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGAATTGAATGATCGGG
CCGAGGGCAGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGGCGCCCTACGCGA
CTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCCTTTACTCTTTTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCG
CCCTGCCATAGTCGCGAGTCTGTTTATAGTCGCGACTGTTGTCATAGTCAACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTC
CCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCC
GTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAG
TGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAG
TAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGG
TGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTAACTATAGCTTCGCAGTGACAACCTTGATCGAATG
TGTAGGATAGGTGGGAGGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGAGAATTCGGGGGGGG
GCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTGTTGAG
CGTAATGGTATAAGCCTGCCTGACTGTGAGACCTACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCT
CAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTG
GGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTT
GGTGTTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGG
CAGCTAAGTTGGTATGGAAGAACTGCAGCTCTGCGGGAAATCCTTCTCTATACAAGTTCTCGGAAGAGGTTTTAGAACAGAACTTCGATAGGCGAGAGGT
GTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACAACTTTACATAACTGAAAGAAAGTCAAACTATTACTGCAATTGCGGTCAGTCTCGATAACTC
TTTAGTTGCCGCAACATACTTCCTCATTCGAAATGACTACCACAAGAAAGAGAAGTGGAAGAAGCGGGGTAGAGGAATTGGTCGACTCATCAGGCTCATG
ACCTGAAGACTGCAGGTTCGAATCCTGTCCCCGCCTAATCAAA