« Back to Rosa chinensis search


Detailed information on CNT30655404


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378675Rosa chinensisArabidopsis thaliana74.6280.2594.2638reverse complement
CNT3092581Rosa chinensisSolanum tuberosum58.13101.8494.16497forward
CNT30223244Rosa chinensisHordeum vulgare86.5568.294.05740reverse complement
CNT30511946Rosa chinensisSolanum lycopersicum29.9448.6798.44256reverse complement
CNT30680034Rosa chinensisTriticum urartu68.4252.3791.62585forward

Expression of CNT30655404

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MSRGPPPPPTRYILRLWAAITIQEDTRNWKDKQTHPVDCRATSPTTQERDSLKSQGRGWPRGPTWRLGISAGNAKVA*

>peptide 2 (44 aa)
MCSNFWPCTDHPMDHGLNGHCLKGLCPGDRRLPPQGTSCAYGPL*

>peptide 3 (45 aa)
PISKYCDEAAVAHPTRSYEVTIHPTRSSGVNKNWGSDAGEIPANG*

>peptide 4 (42 aa)
MRAKFPPMAEMFSRLPPPLWGSGPPRVSRKGRRKEALANRHN*

Sequence

>CNT30655404
GCCCATAAGTAAGTACTGTGACGAAGCGGCTGTTGCTCACCCGACACGATCGTACGAGGTCACAATTCACCCAACACGATCATCCGGGGTGAACAAGAAT
TGGGGATCGGATGCGGGCGAAATTCCCGCCAATGGCTGAGATGTTCAGTCGACTCCCTCCCCCTTTGTGGGGGTCCGGACCCCCACGAGTGAGCAGAAAA
GGGAGGAGGAAAGAGGCCCTGGCGAACCGTCATAATTAGTGAACAAGTGTAAGCTTCGCTGCCCGACAGTATGGAGTACTGACCACACCGAGGGACAGGC
CCTGAAGCGAAGGACGGGAACGAGCGGAATCAATGTGTTCCAATTTCTGGCCTTGCACCGACCATCCAATGGACCATGGACTAAACGGCCACTGCCTGAA
AGGACTATGTCCAGGGGACCGCCGCCTCCCCCCACAAGGTACATCTTGCGCCTATGGGCCGCTATAACTATCCAAGAAGACACTCGAAACTGGAAGGATA
AACAAACCCACCCGGTGGACTGCCGAGCTACAAGTCCCACGACACAGGAGCGGGATTCTCTAAAAAGCCAAGGTCGCGGGTGGCCAAGAGGGCCTACTTG
GAGACTTGGGATCTCAGCAGGAAATGCGAAGGTTGCTTAAAGCCGGCCGGCCGATAGGCGGAAGATAATCCACTAGTTTTGTTCTGATCTGAGTAGGCTT
ATAATAGGGAATACTCTAACCCTGGGAACCGGGGCCTGGCCATCCTTCGTTTTCGGTCGACGTTTCGGTTTGTCCGTCGAAGCTGAATGTTTCGATCTGG
TTCGATTCATGGTCGCATCCGCAAACGTTTTTCCGTGGGCCGACGCCCCCCCCCC