« Back to Rosa chinensis search


Detailed information on CNT30655398


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202237Rosa chinensisPisum sativum2.5622.2794.7457forward
CNT30147536Rosa chinensisMedicago truncatula24.1822.8189.78538reverse complement
CNT30210199Rosa chinensisHelianthus annuus3.5121.2592.3178reverse complement
CNT30622536Rosa chinensisCajanus cajan30.4740.9490.41678reverse complement
CNT30152492Rosa chinensisPrunus persica12.8122.6295.79285reverse complement
CNT3035318Rosa chinensisCucumis melo23.6432.4587.26526forward
CNT30725731Rosa chinensisLupinus angustifolius32.2247.990.38717reverse complement

Expression of CNT30655398

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MHQENCQMHELRISSPPPRRWPFVRSAHCIVRKLAPRESPLLHPLDKNV*

>peptide 2 (40 aa)
MISFLLHSQQECIKKTARCMNSEFLRRPLVVGPSFVVLIV*

>peptide 3 (32 aa)
ARNMSITHRRLVRTEGQCPPNLSGPTGEATGT*

>peptide 4 (57 aa)
MISTFNCAPETRSKHARPVCLFHDMLWSRGSSSGLLALEEVVSVPTSSHAGQTEGKD*

Sequence

>CNT30655398
CCGCTAGAAACATGTCGATTACACACCGGAGGTTGGTAAGAACTGAGGGACAATGCCCCCCTAACTTAAGTGGGCCTACCGGCGAAGCAACTGGTACTTG
AGCGGGCGGGGGGGCGGTTTGGTTTCCCCTCGCAGCAGGAAGAGGCAGTTGTCATTTGAAAGGAAACGCCCCTTGTATAGGGTTCCAAACCCGCGCACCG
TGATAAAAAAAACGCCCTATATATTCTATTAGTAAAGCCTAAACGTCCTTGAATCTACAACTCTCTTTACTGAGCATCCACCAGTGGTTATTTTTTATTT
TCTATTCTATCATTTGTTTGACAGCTTAAACTAGGCTCCATTTTTGAGAGTTTTCGGTCTTAATCAAGATAGGTCAGGGGTGCGTCAGAACGGTCGGTGG
CTGCTTAGTCTCATCCGAGAATTTCTTTGTACTGCTTTTTTCAAAGAAAAAAAAGAAAGAAGGGGTTCGATTTAGGCTCCTTCCCTTACACTGCATAGCT
GCGCTAGCAGGTACTACGAGCCCTCTGTCCCGCGCATCTAACCAGCTCGCGTGGTTCACCGGTTCCACCGAAAACTCTCATTTGTTGAAGCGGAGCATAG
TGCGCTTTAGGCGCCGAGCGAGAAACGTCTCTTCCGGTTTCGGTTTATTCACTGATCTGAAACTTAGCACTTGTTTTATTAGGGCGGCAGCGCTCTTGAA
TGAAGTCTATCCGAACCGAATTAGCACTTCTCAGATCAGGATCAGGCTAGGCCTCTCCGGCTGAGCTGGGTGCCGGGGCCCTGGATGCGCTAGCGATCGG
CACATAGGGGAGTGGTTGCCCGGGTTTCTCGGCCTGGTCTCCTGCACCTCGCATTCATGATATCTACATTCAACTGTGCCCCGGAGACACGGTCGAAGCA
CGCCCGCCCAGTGTGCCTCTTTCACGACATGCTCTGGTCCCGGGGGTCTTCCAGTGGTCTTCTAGCCTTAGAAGAAGTCGTGTCCGTACCAACGTCCTCC
CATGCAGGACAAACTGAAGGAAAAGACTGACCCATTCGGTGACTTTCGCGGTCGCCCTCACTGAACCGACTTGAATCTGAACTACGATTCAGATCACGTC
TTACCGAAATCGGATTTCCTTTTCGTGCCATATGCGCTTAGACTTGACTTTACCCCCTTTTCTTCCCGGTCCAATATTTGTTCTCGAAAGCCGTGTAGAA
TCAAATTTATGACCAACCGCAACGAACAGGAGTTTTTCCACGTACGGAGCAATCAACGAATTACGGCATAATAGAAGATCTACGTAACCCCCTTCAAAAG
ATGATCTCTTTTCTTCTTCATTCTCAACAGGAATGCATCAAGAAAACTGCCAGATGCATGAACTCAGAATTTCTTCGCCGCCCCCTCGTCGTTGGCCCTT
CGTTCGTAGTGCTCATTGTATAGTGAGAAAACTCGCCCCACGAGAAAGCCCTCTTTTACATCCCCTAGACAAAAATGTATAGGAAATGCTACAACCTTCT
TTTGACGACCGGTACAACAAGCTAAAGTGACCTCTACGCGCGACCTGAAAGTTTGTGTTAAGCATATAGTTCCTTTTTGTCTTGCGGTGTCCTATCGCTT
AGCGACAGAGCCATCTTCTTTTGGGGCAGTGAGGAGGACAGGAAAATCCCCTACTCCCCCGCTTTCTTTTTTACAACCTCAAACAAAAGAAGCAAAGAAG
GGAAATCTTCGTAAAGGAAGCAAGGGGTGTCGACTTCGAATTGAGTAGTTAGTCTTCTTTCTACGAGTAGTTAGTCTTCTTTCTACTCTTTTGTAATCGA
AACTAGAATCGAAAGAGCCTCACCCTTTTTTTTATGTATGTGAATTTTCCGAATCTAGTTCTAAATACTGGACTGATCTTTCTCCGCGGTTCGTTCTATT
TTGATAGATAGAGATAGACAGGAGCTAAGTAAACAGAATACAAAAGGCTTACTCCCATTTCTCTCGACTCAGGAATTCTTTCATAGAATCCTTTTTGATT
GCACTACTTTTTGAAAACAACCGTACGGGAGGCGGAGGCCAAAGGAGACCCTTTTACCGGTTGGGTGTGTCCTTCCGGAGAAGACATACCCTTAGGAAGC
TTACCGCGCTTTACTCCCGGAAGACAACCCCAGTACAGTAAATCGTGCATAATTGAATACGAAATCTTTTCGCGCTTTCTTTGTGTCGTACTTCTTGGTC
TTTGCCGGAATTCCGGGCCCCGGGG