Detailed information on CNT30655393


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532270Rosa chinensisEucalyptus grandis12.234.1893.8381forward
CNT30374346Rosa chinensisArabidopsis thaliana58.439.9783.76388reverse complement
CNT30635976Rosa chinensisCapsicum annuum43.3793.5187.5288forward
CNT30592560Rosa chinensisMusa acuminata25.1531.0488.62167reverse complement
CNT30681032Rosa chinensisTriticum urartu14.7642.4298.9898reverse complement
CNT30722000Rosa chinensisTriticum spelta23.9568.8393.71159forward
CNT30574572Rosa chinensisVitis vinifera68.376.7488.11454reverse complement

Expression of CNT30655393

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MEEIEHGNKKQARPPFFDRGGWRKWTKQTRIPHRTNIREKNHIENVPNLVEPCIVSDPNPPGASLP*

Sequence

>CNT30655393
GCGCTTAGCCCCCCCGCTCATGAAAGGGCTCTGCTGCAATGGATGGCAGAGGGTCCGTAGTACCCACAGCGCTGGAGTGATCCAGTAGCCGGGAAGGGGC
CTAGAAGTGCCTACTACTACACCACACTACACTTGGCTCTACACATTTACAGAGCTAACCCCTGTCCGCGGAGCTAAGGGGGCTTCAATCCTTATTCCTT
ATTCCTTATCCCCCCGGGCCTTACTTATTCAGGGGAGAGAGTAGAGCCTCGAGAAGCACTGTTGAGAGGAAGGGCAGTTACACTGCTCCTCTTCATTCTC
TACAGGGTTCCAACCCTTTCTTCAACATAGGTGACAACGAGCGGGGCAGAGATGGAAGAGATCGAACACGGGAATAAGAAGCAAGCTCGCCCTCCTTTTT
TTGATAGAGGGGGATGGAGAAAGTGGACAAAACAGACTCGCATTCCTCATAGAACAAATATACGGGAAAAGAATCATATTGAAAACGTTCCTAACCTCGT
AGAGCCGTGTATTGTAAGTGATCCGAACCCGCCCGGAGCGAGCCTCCCATAGAGGCAAGTGAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGG
TTCGGAGAGGACTCAGCTGTTAGTTAGAACCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTAT